5UBA

Human RNA Pseudouridylate Synthase Domain Containing 4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.54 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.198 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The Crystal Structure of Human Pseudouridylate Synthase Domain Containing 4. To be published

ZENG, H.DONG, A.TEMPEL, W.Bountra, C.Arrowsmith, C.H.Edwards, A.M.BROWN, P.J.WU, H.Structural Genomics Consortium (SGC)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
RNA pseudouridylate synthase domain-containing protein 4
A
295Homo sapiensMutation(s): 0 
Gene Names: RPUSD4
EC: 5.4.99.-
Find proteins for Q96CM3 (Homo sapiens)
Go to Gene View: RPUSD4
Go to UniProtKB:  Q96CM3
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
CA
Query on CA

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Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
UNX
Query on UNX

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Download CCD File 
A
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 54.189α = 90.00
b = 54.189β = 90.00
c = 105.349γ = 90.00
Software Package:
Software NamePurpose
HKL-3000phasing
DENZOdata reduction
PHASERphasing
HKL-3000data scaling
REFMACrefinement
SCALEPACKdata scaling
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-02-22
    Type: Initial release
  • Version 1.1: 2017-11-22
    Type: Refinement description
  • Version 1.2: 2018-04-18
    Type: Data collection