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Download EndnoteCrystal structure of YPT31, a Rab family GTPase from Candida albicans, in complex with GDP and Zn(II)
Stogios, P.J.To be published.
5UB8
Crystal structure of YPT31, a Rab family GTPase from Candida albicans, in complex with GDP and Zn(II)
- DOI: 10.2210/pdb5UB8/pdb
- Classification: PROTEIN BINDING
- Organism(s): Candida albicans (strain SC5314 / ATCC MYA-2876)
- Expression System: Escherichia coli BL21(DE3)
- Deposited: 2016-12-20 Released: 2017-01-11
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.226
- R-Value Work: 0.185
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Likely rab family GTP-binding protein | A | 222 | Candida albicans (strain SC5314 / ATCC MYA-2876) | Mutation(s): 0 Gene Names: YPT31 |
Find proteins for A0A1D8PTI2 (Candida albicans (strain SC5314 / ATCC MYA-2876)) Go to UniProtKB: A0A1D8PTI2 | ||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GDP Query on GDP | A | GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N |  | Ligand Interaction | |
| ZN Query on ZN | A | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| UNK Query on UNK | A | L-PEPTIDE LINKING | C4 H9 N O2 |  | -- |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.226
- R-Value Work: 0.185
- Space Group: C 1 2 1
- Diffraction Data DOI:
10.18430/M35UB8 Protein Diffraction
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 118.303 | α = 90.00 |
| b = 43.392 | β = 89.05 |
| c = 41.662 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| PHENIX | model building |
| PHENIX | phasing |
| HKL-3000 | data scaling |
| Coot | model building |
| HKL-3000 | data reduction |
Entry History & Funding Information
Deposition Data
- Deposited Date: 2016-12-20
- Released Date: 2017-01-11
- Deposition Author(s): Stogios, P.J., Skarina, T., Di Leo, R., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases | United States | HHSCN27220120026C |
Revision History
- Version 1.0: 2017-01-11
Type: Initial release - Version 1.1: 2017-09-20
Type: Author supporting evidence
