5U9O

Cocrystal structure of the intermembrane space region of the plastid division proteins PARC6 and PDV1

• PDB DOI: https://doi.org/10.2210/pdb5U9O/pdb

• Classification: CELL CYCLE
• Organism(s): Arabidopsis thaliana
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2016-12-16 Released: 2017-12-20 
• Deposition Author(s): Delmar, J.A., Chou, T.H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.37 Å
• R-Value Free: 0.318 
• R-Value Work: 0.250 
• R-Value Observed: 0.254 

Literature

Cocrystal structure of the intermembrane space region of the plastid division proteins PARC6 and PDV1

Delmar, J.A., Yu, E.W., Osteryoung, K.W.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 169.33 kDa 
• Atom Count: 9,299 
• Modelled Residue Count: 1,145 
• Deposited Residue Count: 1,496 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Plastid division protein CDP1, chloroplastic,Plastid division protein PDV1	A, B, C, D, E, F, G, H	187	Arabidopsis thaliana	Mutation(s): 0  Gene Names: CDP1, ARC6H, PARC6, At3g19180, MVI11.9, PDV1, At5g53280, K19E1.8
UniProt
Find proteins for Q9FK13 (Arabidopsis thaliana) Explore Q9FK13  Go to UniProtKB:  Q9FK13
Find proteins for Q8VY16 (Arabidopsis thaliana) Explore Q8VY16  Go to UniProtKB:  Q8VY16
UniProt Groups	Q9FK13Q8VY16

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.37 Å
• R-Value Free: 0.318 
• R-Value Work: 0.250 
• R-Value Observed: 0.254 
• Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.227	α = 88.36
b = 80.192	β = 80.99
c = 84.07	γ = 83.49

Software Package:

Software Name	Purpose
PHENIX	refinement
SCALEPACK	data scaling
PDB_EXTRACT	data extraction
Coot	refinement
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-12-20 
Deposition Author(s): Delmar, J.A., Chou, T.H.

Revision History  

• Version 1.0: 2017-12-20
  Type: Initial release
  
• Version 1.1: 2024-03-06
  Changes: Data collection, Database references