5U85

Murine saposin-D (SapD), open conformation


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.186 
  • R-Value Work: 0.166 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of saposin D in an open conformation.

Gebai, A.Gorelik, A.Nagar, B.

(2018) J. Struct. Biol. 204: 145-150


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Saposin-D
A, B
83Mus musculusMutation(s): 0 
Gene Names: Psap (Sgp1)
Find proteins for Q61207 (Mus musculus)
Go to UniProtKB:  Q61207
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.186 
  • R-Value Work: 0.166 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 41.650α = 90.00
b = 43.163β = 90.00
c = 88.822γ = 90.00
Software Package:
Software NamePurpose
ACORNphasing
PHENIXrefinement
HKL-2000data scaling
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-06-13
    Type: Initial release
  • Version 1.1: 2018-08-01
    Type: Data collection, Database references
  • Version 1.2: 2018-10-10
    Type: Data collection, Database references, Structure summary