5TVC

Crystal structure of a chimeric acetylcholine binding protein from Aplysia californica (Ac-AChBP) containing loop C from the human alpha 3 nicotinic acetylcholine receptor in complex with (E,2S)-N-methyl-5-(5-phenoxy-3-pyridyl)pent-4-en-2-amine (TI-5312)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.926 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.189 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of a chimeric acetylcholine binding protein from Aplysia californica (Ac-AChBP) containing loop C from the human alpha 3 nicotinic acetylcholine receptor in complex with (E,2S)-N-methyl-5-(5-phenoxy-3-pyridyl)pent-4-en-2-amine (TI-5312)

Bobango, J.Wu, J.Talley, I.T.Talley, T.T.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Soluble acetylcholine receptor,Neuronal acetylcholine receptor subunit alpha-3 chimera
A, B, C, D, E
230Homo sapiensAplysia californica
This entity is chimeric
Mutation(s): 2 
Gene Names: CHRNA3 (NACHRA3),
Find proteins for P32297 (Homo sapiens)
Go to Gene View: CHRNA3
Go to UniProtKB:  P32297
Find proteins for Q8WSF8 (Aplysia californica)
Go to UniProtKB:  Q8WSF8
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B, C, D, E
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
7LB
Query on 7LB

Download SDF File 
Download CCD File 
B, C, D, E
(E,2S)-N-methyl-5-(5-phenoxy-3-pyridyl)pent-4-en-2-amine
(2S,4E)-N-methyl-5-(5-phenoxypyridin-3-yl)pent-4-en-2-amine
C17 H20 N2 O
MVYJEPAEKWWVOZ-OWNNVSBGSA-N
 Ligand Interaction
1PE
Query on 1PE

Download SDF File 
Download CCD File 
A
PENTAETHYLENE GLYCOL
PEG400
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.926 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.189 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 69.854α = 90.00
b = 78.040β = 95.03
c = 120.569γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
DENZOdata reduction
SCALEPACKdata scaling
HKL-2000data reduction
PHASERphasing
PDB_EXTRACTdata extraction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-11-30
    Type: Initial release
  • Version 1.1: 2017-11-22
    Type: Refinement description