5TV7

2.05 Angstrom Resolution Crystal Structure of Peptidoglycan-Binding Protein from Clostridioides difficile in Complex with Glutamine Hydroxamate.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.210 
  • R-Value Work: 0.172 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

2.05 Angstrom Resolution Crystal Structure of Peptidoglycan-Binding Protein from Clostridioides difficile in Complex with Glutamine Hydroxamate.

Minasov, G.Wawrzak, Z.Shuvalova, L.Winsor, J.Dubrovska, I.Grimshaw, S.Kwon, K.Anderson, W.F.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Putative peptidoglycan-binding/hydrolysing protein
A, B
178Peptoclostridium difficile (strain 630)Mutation(s): 0 
Find proteins for Q181X4 (Peptoclostridium difficile (strain 630))
Go to UniProtKB:  Q181X4
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
HGA
Query on HGA

Download SDF File 
Download CCD File 
A, B
GLUTAMINE HYDROXAMATE
C5 H10 N2 O4
YVGZXTQJQNXIAU-VKHMYHEASA-N
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
CME
Query on CME
A, B
L-PEPTIDE LINKINGC5 H11 N O3 S2CYS
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 134.949α = 90.00
b = 35.008β = 126.25
c = 101.533γ = 90.00
Software Package:
Software NamePurpose
HKL-3000data scaling
REFMACrefinement
PHENIXphasing
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-12-14
    Type: Initial release