5TSX

HIV-1 CA hexamer with NUP153 peptide - P1 crystal form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.185 
  • R-Value Observed: 0.187 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

HIV-1 CA hexamer with NUP153 peptide - P1 crystal form

Skorupka, K.Zadrozny, K.Ganser-Pornillos, B.K.Pornillos, O.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HIV-1 CA proteinA, B, C, D, E, F, G, H, I, J, K, L231Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)Mutation(s): 4 
Gene Names: gag
Find proteins for P12493 (Human immunodeficiency virus type 1 group M subtype B (isolate NY5))
Explore P12493 
Go to UniProtKB:  P12493
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Nuclear pore complex protein Nup153M, N, O, P, R, T23Homo sapiensMutation(s): 0 
Gene Names: NUP153
Find proteins for P49790 (Homo sapiens)
Explore P49790 
Go to UniProtKB:  P49790
NIH Common Fund Data Resources
PHAROS  P49790
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FLU
Query on FLU

Download CCD File 
A, B, G, H
2-(6-HYDROXY-3-OXO-3H-XANTHEN-9-YL)-BENZOIC ACID
C20 H12 O5
YKGGGCXBWXHKIZ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.185 
  • R-Value Observed: 0.187 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 57.333α = 89.54
b = 91.487β = 90.49
c = 150.047γ = 96.08
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesR01-AI120956
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesP50-GM103297

Revision History 

  • Version 1.0: 2017-11-08
    Type: Initial release
  • Version 1.1: 2019-12-11
    Changes: Author supporting evidence, Database references