5TR9

Crystal Structure of a ferredoxin NADP+ reductase from Neisseria gonorrhoeae with bound FAD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.163 
  • R-Value Work: 0.148 
  • R-Value Observed: 0.149 

Starting Model: experimental
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Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Crystal Structure of a ferredoxin NADP+ reductase from Neisseria gonorrhoeae with bound FAD

Mayclin, S.J.Fox III, D.Lorimer, D.D.Edwards, T.E.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ferredoxin-NADP reductase
A, B
267Neisseria gonorrhoeae MIA_2011_03-10Mutation(s): 0 
Gene Names: M736_10480
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 5 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
FAD
Query on FAD

Download Ideal Coordinates CCD File 
C [auth A],
Y [auth B]
FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
EDO
Query on EDO

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AA [auth B]
BA [auth B]
CA [auth B]
D [auth A]
E [auth A]
AA [auth B],
BA [auth B],
CA [auth B],
D [auth A],
E [auth A],
F [auth A],
W [auth A],
Z [auth B]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
CL
Query on CL

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DA [auth B]
EA [auth B]
FA [auth B]
G [auth A]
GA [auth B]
DA [auth B],
EA [auth B],
FA [auth B],
G [auth A],
GA [auth B],
H [auth A],
HA [auth B],
I [auth A],
IA [auth B],
J [auth A],
JA [auth B],
K [auth A],
KA [auth B],
L [auth A],
LA [auth B],
M [auth A],
MA [auth B],
N [auth A],
NA [auth B],
O [auth A],
OA [auth B],
P [auth A],
Q [auth A],
R [auth A],
S [auth A],
T [auth A],
U [auth A],
X [auth A]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
MG
Query on MG

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V [auth A]MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
NA
Query on NA

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PA [auth B],
QA [auth B]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.163 
  • R-Value Work: 0.148 
  • R-Value Observed: 0.149 
  • Space Group: I 21 3
  • Diffraction Data: https://doi.org/10.18430/M35TR9
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 163.01α = 90
b = 163.01β = 90
c = 163.01γ = 90
Software Package:
Software NamePurpose
XSCALEdata scaling
MOLREPphasing
PHENIXrefinement
PDB_EXTRACTdata extraction
Cootmodel building

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-11-09
    Type: Initial release
  • Version 1.1: 2017-10-11
    Changes: Data collection, Derived calculations, Refinement description
  • Version 1.2: 2023-10-04
    Changes: Data collection, Database references, Derived calculations, Refinement description