5TR4

Structure of Ubiquitin activating enzyme (Uba1) in complex with ubiquitin and TAK-243


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.216 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin-activating enzyme E1 1
A, C
1017Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 2 
Gene Names: UBA1
EC: 6.2.1.45
Find proteins for P22515 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: UBA1
Go to UniProtKB:  P22515
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin
B, D
76Bos taurusMutation(s): 0 
Gene Names: UBB
Find proteins for P0CG53 (Bos taurus)
Go to Gene View: UBB
Go to UniProtKB:  P0CG53
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
61T
Query on 61T

Download SDF File 
Download CCD File 
B, D
[(1~{R},2~{R},3~{S},4~{R})-2,3-bis(oxidanyl)-4-[[2-[3-(trifluoromethylsulfanyl)phenyl]pyrazolo[1,5-a]pyrimidin-7-yl]amino]cyclopentyl]methyl sulfamate
MLN7243
C19 H20 F3 N5 O5 S2
KJDAGXLMHXUAGV-DGWLBADLSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.216 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 212.485α = 90.00
b = 172.148β = 90.00
c = 79.424γ = 90.00
Software Package:
Software NamePurpose
MOLREPphasing
HKL-2000data scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKLdata scaling
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2016-10-25 
  • Released Date: 2017-11-01 
  • Deposition Author(s): Sintchak, M.D.

Revision History 

  • Version 1.0: 2017-11-01
    Type: Initial release