5TNR

Crystal structure of the E153Q mutant of the CFTR inhibitory factor Cif containing the adducted 16,17-EpDPE hydrolysis intermediate

  • Classification: HYDROLASE
  • Organism(s): Pseudomonas aeruginosa UCBPP-PA14
  • Expression System: Escherichia coli
  • Mutation(s): Yes 

  • Deposited: 2016-10-14 Released: 2017-10-18 
  • Deposition Author(s): Hvorecny, K.L., Madden, D.R.
  • Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID), National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK), National Institutes of Health/National Institute of Environmental Health Sciences (NIH/NIEHS), Cystic Fibrosis Foundation

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.189 
  • R-Value Work: 0.161 
  • R-Value Observed: 0.163 

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Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history


Literature

Active-Site Flexibility and Substrate Specificity in a Bacterial Virulence Factor: Crystallographic Snapshots of an Epoxide Hydrolase.

Hvorecny, K.L.Bahl, C.D.Kitamura, S.Lee, K.S.S.Hammock, B.D.Morisseau, C.Madden, D.R.

(2017) Structure 25: 697-707.e4

  • DOI: https://doi.org/10.1016/j.str.2017.03.002
  • Primary Citation of Related Structures:  
    5TND, 5TNE, 5TNF, 5TNG, 5TNH, 5TNI, 5TNJ, 5TNK, 5TNL, 5TNM, 5TNN, 5TNP, 5TNQ, 5TNR, 5TNS

  • PubMed Abstract: 

    Pseudomonas aeruginosa secretes an epoxide hydrolase with catalytic activity that triggers degradation of the cystic fibrosis transmembrane conductance regulator (CFTR) and perturbs other host defense networks. Targets of this CFTR inhibitory factor (Cif) are largely unknown, but include an epoxy-fatty acid. In this class of signaling molecules, chirality can be an important determinant of physiological output and potency. Here we explore the active-site chemistry of this two-step α/β-hydrolase and its implications for an emerging class of virulence enzymes. In combination with hydrolysis data, crystal structures of 15 trapped hydroxyalkyl-enzyme intermediates reveal the stereochemical basis of Cif's substrate specificity, as well as its regioisomeric and enantiomeric preferences. The structures also reveal distinct sets of conformational changes that enable the active site to expand dramatically in two directions, accommodating a surprising array of potential physiological epoxide targets. These new substrates may contribute to Cif's diverse effects in vivo, and thus to the success of P. aeruginosa and other pathogens during infection.


  • Organizational Affiliation

    Department of Biochemistry and Cell Biology, Geisel School of Medicine, Dartmouth College, Hanover, NH 03755, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
CFTR inhibitory factorA [auth C],
B [auth D],
C [auth A],
D [auth B]
301Pseudomonas aeruginosa UCBPP-PA14Mutation(s): 1 
Gene Names: PA14_26090
UniProt
Find proteins for A0A0H2ZD27 (Pseudomonas aeruginosa (strain UCBPP-PA14))
Explore A0A0H2ZD27 
Go to UniProtKB:  A0A0H2ZD27
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0H2ZD27
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.189 
  • R-Value Work: 0.161 
  • R-Value Observed: 0.163 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 83.846α = 90
b = 168.912β = 90
c = 176.424γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI091699
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM113132
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM106394
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)United StatesDK097154
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM008704
National Institutes of Health/National Institute of Environmental Health Sciences (NIH/NIEHS)United StatesES002710
National Institutes of Health/National Institute of Environmental Health Sciences (NIH/NIEHS)United StatesES004699
National Institutes of Health/National Institute of Environmental Health Sciences (NIH/NIEHS)United StatesES024806
Cystic Fibrosis FoundationUnited StatesSTANTO19R0

Revision History  (Full details and data files)

  • Version 1.0: 2017-10-18
    Type: Initial release
  • Version 1.1: 2019-05-08
    Changes: Data collection, Database references
  • Version 1.2: 2022-03-23
    Changes: Author supporting evidence, Database references
  • Version 1.3: 2023-10-04
    Changes: Data collection, Refinement description