Biological Assembly 1  

 3D View: Structure | Electron Density

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Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - AB 

Biological assembly 1 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 51369.79 
• Atom Count: 3230 
• Residue Count: 480 
• Unique protein chains: 2

5TJD

Computer-based rational design of improved functionality for antibody catalysts toward organophosphorus compounds

• DOI: 10.2210/pdb5TJD/pdb

• Classification: IMMUNE SYSTEM
• Expression System: Komagataella phaffii GS115


• Deposited: 2016-10-04 Released: 2018-05-02 
• Deposition Author(s): Chatziefthimiou, S., Stepanova, A., Smirnov, I., Gabibov, A., Wilmanns, M.
• Funding Organization(s): BMBF; RFMEF 

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.1 Å
• R-Value Free: 0.249 
• R-Value Work: 0.196 

Literature

Computer-based rational design of improved functionality for antibody catalysts toward organophosphorus compounds

Stepanova, A., Smirnov, I., Chatziefthimiou, S.D., Golovin, A., Mokrushina, Y., Wilmanns, M., Blackburn, M., Gabibov, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
FAB A.17 L47K mutant HEAVY CHAIN	H	233	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
FAB A.17 L47K mutant Light Chain	L	247	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.1 Å
• R-Value Free: 0.249 
• R-Value Work: 0.196 
• Space Group: P 1 2₁ 1

Unit Cell:

Length (Å)	Angle (°)
a = 51.605	α = 90.00
b = 66.637	β = 107.00
c = 66.091	γ = 90.00

Software Package:

Software Name	Purpose
Aimless	data scaling
XDS	data reduction
PHENIX	refinement
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Deposited Date: 2016-10-04 
• Released Date: 2018-05-02 
• Deposition Author(s): Chatziefthimiou, S., Stepanova, A., Smirnov, I., Gabibov, A., Wilmanns, M.

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Funding Organization	Location	Grant Number
BMBF	Germany	05K14YEB
RFMEF	Russian Federation	RFMEFI61614X0009

Revision History 

• Version 1.0: 2018-05-02
  Type: Initial release