Macromolecule Content

Total Structure Weight: 51.37 kDa
Atom Count: 3322
Residue Count: 433
Unique protein chains: 2

5TJD

Computer-based rational design of improved functionality for antibody catalysts toward organophosphorus compounds

DOI: 10.2210/pdb5TJD/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo sapiens
Expression System: Komagataella phaffii GS115
Mutation(s): No

Deposited: 2016-10-04 Released: 2018-05-02
Deposition Author(s): Chatziefthimiou, S., Stepanova, A., Smirnov, I., Gabibov, A., Wilmanns, M.
Funding Organization(s): BMBF, RFMEF

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.249
R-Value Work: 0.196
R-Value Observed: 0.198

wwPDB Validation3D Report Full Report

Literature

Computer-based rational design of improved functionality for antibody catalysts toward organophosphorus compounds

Stepanova, A., Smirnov, I., Chatziefthimiou, S.D., Golovin, A., Mokrushina, Y., Wilmanns, M., Blackburn, M., Gabibov, A.

To be published.

Macromolecules

Find similar proteins by: Sequence | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
FAB A.17 L47K mutant HEAVY CHAIN	H	233	Homo sapiens	Mutation(s): 0
Protein Feature View
( Mouse scroll to zoom / Hold left click to move ) Reference Sequence

Find similar proteins by: Sequence | Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
FAB A.17 L47K mutant Light Chain	L	247	Homo sapiens	Mutation(s): 0
Protein Feature View
( Mouse scroll to zoom / Hold left click to move ) Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.249
R-Value Work: 0.196
R-Value Observed: 0.198
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 51.605	α = 90
b = 66.637	β = 107
c = 66.091	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Deposited Date: 2016-10-04
Released Date: 2018-05-02

Deposition Author(s):

Chatziefthimiou, S.

Funding Organization	Location	Grant Number
BMBF	Germany	05K14YEB
RFMEF	Russian Federation	RFMEFI61614X0009

Revision History

Version 1.0: 2018-05-02
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.