5THW

Crystal structure of Amidase, hydantoinase/carbamoylase family from Burkholderia multivorans


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.155 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of Amidase, hydantoinase/carbamoylase family from Burkholderia multivorans

Abendroth, J.Delker, S.L.Lorimer, D.D.Edwards, T.E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Deacylase
A, B, C, D
434Burkholderia multivorans (strain ATCC 17616 / 249)Mutation(s): 0 
EC: 3.5.1.87
Find proteins for A0A0H3KRF1 (Burkholderia multivorans (strain ATCC 17616 / 249))
Go to UniProtKB:  A0A0H3KRF1
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B, C, D
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
URP
Query on URP

Download SDF File 
Download CCD File 
A, C
N-(AMINOCARBONYL)-BETA-ALANINE
N-CARBAMYL-BETA-ALANINE, BETA-UREIDOPROPIONATE
C4 H8 N2 O3
JSJWCHRYRHKBBW-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
B, D
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 86.460α = 90.00
b = 88.510β = 90.21
c = 126.440γ = 90.00
Software Package:
Software NamePurpose
MOLREPphasing
Cootmodel building
PHENIXrefinement
XSCALEdata scaling
XDSdata scaling
XDSdata reduction
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-11-09
    Type: Initial release
  • Version 1.1: 2017-11-22
    Type: Derived calculations, Refinement description