5TEH

c-Src V281C kinase domain in complex with Rao-IV-156


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.99 Å
  • R-Value Free: 0.366 
  • R-Value Work: 0.304 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

A combined approach reveals a regulatory mechanism coupling Src's kinase activity, localization, and phosphotransferase-independent functions

Register, A.C.Maly, D.J.

(--) Mol.Cell 2019: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Proto-oncogene tyrosine-protein kinase Src
A, B
286Gallus gallusMutation(s): 1 
Gene Names: SRC
EC: 2.7.10.2
Find proteins for P00523 (Gallus gallus)
Go to Gene View: SRC
Go to UniProtKB:  P00523
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
S56
Query on S56

Download SDF File 
Download CCD File 
A, B
(2S)-3-[4-amino-7-(2-methoxyethyl)-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-6-yl]-2-cyano-N-(propan-2-yl)propanamide
Rao-IV-156, bound form
C28 H30 N6 O3
GAMOPTBAZOPJOL-FQEVSTJZSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.99 Å
  • R-Value Free: 0.366 
  • R-Value Work: 0.304 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 41.790α = 76.73
b = 63.590β = 89.93
c = 76.070γ = 89.79
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
Aimlessdata scaling
REFMACrefinement
PHASERphasing
MOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesR01GM086858

Revision History 

  • Version 1.0: 2017-09-27
    Type: Initial release
  • Version 1.1: 2018-01-17
    Type: Author supporting evidence
  • Version 1.2: 2019-02-27
    Type: Data collection, Database references