5T1P

Crystal structure of the putative periplasmic solute-binding protein from Campylobacter jejuni


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.176 
  • R-Value Observed: 0.178 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of the putative periplasmic solute-binding protein from Campylobacter jejuni

Filippova, E.V.Wawrzsak, Z.Sandoval, J.Skarina, T.Grimshaw, S.Savchenko, A.Anderson, W.F.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
ABC transporter, periplasmic substrate-binding proteinA, B, C, D, E, F, G, H348Campylobacter jejuni BJ-CJGB96299Mutation(s): 0 
Gene Names: K680_1691
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GPE (Subject of Investigation/LOI)
Query on GPE

Download Ideal Coordinates CCD File 
J [auth A], K [auth B], L [auth C], M [auth D]L-ALPHA-GLYCEROPHOSPHORYLETHANOLAMINE
C5 H14 N O6 P
JZNWSCPGTDBMEW-RXMQYKEDSA-N
 Ligand Interaction
BTB
Query on BTB

Download Ideal Coordinates CCD File 
N [auth E], R [auth G]2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
C8 H19 N O5
OWMVSZAMULFTJU-UHFFFAOYSA-N
 Ligand Interaction
TRS
Query on TRS

Download Ideal Coordinates CCD File 
P [auth F], S [auth H]2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
 Ligand Interaction
PEG
Query on PEG

Download Ideal Coordinates CCD File 
I [auth A], O [auth E], Q [auth F], T [auth H]DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D, E, F, G, HL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.176 
  • R-Value Observed: 0.178 
  • Space Group: P 1
  • Diffraction Data DOI: 10.18430/M35T1P Protein Diffraction
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 82.19α = 68.88
b = 89.276β = 82.52
c = 100.394γ = 70.66
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
PHENIXphasing
PHENIXmodel building

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment  



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-09-07
    Type: Initial release
  • Version 1.1: 2017-11-22
    Changes: Derived calculations, Refinement description