5SXO | pdb_00005sxo

1.35 angstrom resolution crystal structure of beta-ketoacyl-ACP synthase II (FabF) from Listeria monocytogenes

• PDB DOI: https://doi.org/10.2210/pdb5SXO/pdb

• Classification: TRANSFERASE
• Organism(s): Listeria monocytogenes ATCC 19115
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2016-08-09 Released: 2016-11-02 
• Deposition Author(s): Soares da Costa, T.P., Nanson, J.D., Forwood, J.K.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.35 Å
• R-Value Free: 
  0.165 (Depositor), 0.170 (DCC) 
• R-Value Work: 
  0.148 (Depositor), 0.150 (DCC) 
• R-Value Observed: 
  0.149 (Depositor) 

Starting Model: experimental

Literature

1.35 angstrom resolution crystal structure of beta-ketoacyl-ACP synthase II (FabF) from Listeria monocytogenes

Soares da Costa, T.P., Nanson, J.D., Forwood, J.K.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 44.33 kDa 
• Atom Count: 3,448 
• Modeled Residue Count: 409 
• Deposited Residue Count: 413 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-oxoacyl-[acyl-carrier-protein] synthase 2	A	413	Listeria monocytogenes ATCC 19115	Mutation(s): 0  Gene Names: LmNIHS28_01559, M643_06390 EC: 2.3.1.179
UniProt
Find proteins for A0A0B8RFI6 (Listeria monocytogenes) Explore A0A0B8RFI6  Go to UniProtKB:  A0A0B8RFI6

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.35 Å
• R-Value Free:  0.165 (Depositor), 0.170 (DCC) 
• R-Value Work:  0.148 (Depositor), 0.150 (DCC) 
• R-Value Observed: 0.149 (Depositor) 

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.75	α = 90
b = 73.75	β = 90
c = 170.27	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PHASER	phasing
Aimless	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-11-02 
Deposition Author(s): Soares da Costa, T.P., Nanson, J.D., Forwood, J.K.

Revision History  

• Version 1.0: 2016-11-02
  Type: Initial release
  
• Version 1.1: 2023-10-04
  Changes: Data collection, Database references, Derived calculations, Refinement description