5SWV | pdb_00005swv

Dehydroquinate dehydratase and shikimate dehydrogenase from S. pombe AroM

• PDB DOI: https://doi.org/10.2210/pdb5SWV/pdb

• Classification: LYASE
• Organism(s): Schizosaccharomyces pombe 972h-
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2016-08-08 Released: 2016-12-21 
• Deposition Author(s): Light, S.H., Minasov, G., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.65 Å
• R-Value Free: 
  0.233 (Depositor), 0.240 (DCC) 
• R-Value Work: 
  0.194 (Depositor), 0.200 (DCC) 
• R-Value Observed: 
  0.196 (Depositor) 

Literature

Dehydroquinate dehydratase and shikimate dehydrogenase from S. pombe AroM

Light, S.H., Minasov, G., Anderson, W.F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 59.72 kDa 
• Atom Count: 4,285 
• Modelled Residue Count: 530 
• Deposited Residue Count: 531 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pentafunctional AROM polypeptide	A [auth C]	531	Schizosaccharomyces pombe 972h-	Mutation(s): 0  Gene Names: aro1, SPAC1834.02 EC: 4.2.3.4 (PDB Primary Data), 2.5.1.19 (PDB Primary Data), 2.7.1.71 (PDB Primary Data), 4.2.1.10 (PDB Primary Data), 1.1.1.25 (PDB Primary Data)
UniProt
Find proteins for Q9P7R0 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)) Explore Q9P7R0  Go to UniProtKB:  Q9P7R0

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PGE	B [auth C], C	TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.65 Å
• R-Value Free:  0.233 (Depositor), 0.240 (DCC) 
• R-Value Work:  0.194 (Depositor), 0.200 (DCC) 
• R-Value Observed: 0.196 (Depositor) 

Diffraction Data: https://doi.org/10.18430/m35swv

Space Group: P 6₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 121.797	α = 90
b = 121.797	β = 90
c = 191.851	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-12-21 
Deposition Author(s): Light, S.H., Minasov, G., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History  

• Version 1.0: 2016-12-21
  Type: Initial release
  
• Version 1.1: 2017-09-27
  Changes: Data collection
• Version 1.2: 2024-03-06
  Changes: Data collection, Database references