Download MendeleyDesign of a nanomolar affinity ligand to the KIX domain of CBP
Langelaan, D.N., Smith, S.P.To be published.
5SVH
Crystal structure of the KIX domain of CBP in complex with a MLL/c-Myb chimera
- PDB DOI: 10.2210/pdb5SVH/pdb
- Classification: TRANSCRIPTION
- Organism(s): Homo sapiens, Gallus gallus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2016-08-06 Released: 2018-05-09
- Funding Organization(s): Canadian Institutes of Health Research (CIHR)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.242
- R-Value Work: 0.206
- R-Value Observed: 0.208
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| CREB-binding protein | A | 87 | Homo sapiens | Mutation(s): 0 Gene Names: CREBBP, CBP EC: 2.3.1.48 (PDB Primary Data), 2.3.1 (UniProt) |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q92793 (Homo sapiens) Explore Q92793 Go to UniProtKB: Q92793 | |||||
PHAROS: Q92793 GTEx: ENSG00000005339 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q92793 | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| MLL/c-Myb chimera | B | 58 | Homo sapiens, Gallus gallus This entity is chimeric | Mutation(s): 0 Gene Names: KMT2A, ALL1, CXXC7, HRX, HTRX, MLL, MLL1, TRX1, MYB EC: 2.1.1.43 (PDB Primary Data), 2.1.1.364 (UniProt), 2.1.1 (UniProt) |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01103 (Gallus gallus) Explore P01103 Go to UniProtKB: P01103 | |||||
Find proteins for Q03164 (Homo sapiens) Explore Q03164 Go to UniProtKB: Q03164 | |||||
PHAROS: Q03164 GTEx: ENSG00000118058 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Groups | P01103Q03164 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | C [auth A], I [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| CL Query on CL | D [auth A], E [auth A], F [auth A], G [auth A], H [auth A], | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.242
- R-Value Work: 0.206
- R-Value Observed: 0.208
- Space Group: P 63 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 119.82 | α = 90 |
| b = 119.82 | β = 90 |
| c = 50.43 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| iMOSFLM | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Deposited Date: 2016-08-06
- Released Date: 2018-05-09 Deposition Author(s): Langelaan, D.N., Smith, S.P., Allingham, J.A.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Canadian Institutes of Health Research (CIHR) | Canada | -- |
Revision History (Full details and data files)
- Version 1.0: 2018-05-09
Type: Initial release - Version 1.1: 2018-10-17
Changes: Data collection, Source and taxonomy, Structure summary - Version 1.2: 2020-01-08
Changes: Author supporting evidence
