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Download EndnoteDesign of a nanomolar affinity ligand to the KIX domain of CBP
Langelaan, D.N., Smith, S.P.To be published.
5SVH
Crystal structure of the KIX domain of CBP in complex with a MLL/c-Myb chimera
- DOI: 10.2210/pdb5SVH/pdb
- Classification: TRANSCRIPTION
- Organism(s): Gallus gallus, Homo sapiens
- Expression System: Escherichia coli
- Deposited: 2016-08-06 Released: 2018-05-09
- Funding Organization(s): Canadian Institutes of Health Research
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.242
- R-Value Work: 0.206
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| CREB-binding protein | A | 87 | Homo sapiens | Mutation(s): 0 Gene Names: CREBBP (CBP) EC: 2.3.1.48 |
Find proteins for Q92793 (Homo sapiens) Go to Gene View: CREBBP Go to UniProtKB: Q92793 | ||||
Entity ID: 2 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| MLL/c-Myb chimera | B | 58 | Gallus gallus, Homo sapiens This entity is chimeric | Mutation(s): 0 Gene Names: MYB, KMT2A (ALL1, CXXC7, HRX, HTRX, MLL, MLL1, TRX1) EC: 2.1.1.43 |
Find proteins for P01103 (Gallus gallus) Go to Gene View: MYB Go to UniProtKB: P01103 | ||||
Find proteins for Q03164 (Homo sapiens) Go to Gene View: KMT2A Go to UniProtKB: Q03164 | ||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | A, B | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| GOL Query on GOL | A, B | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.242
- R-Value Work: 0.206
- Space Group: P 63 2 2
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 119.820 | α = 90.00 |
| b = 119.820 | β = 90.00 |
| c = 50.430 | γ = 120.00 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| iMOSFLM | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Deposited Date: 2016-08-06
- Released Date: 2018-05-09
- Deposition Author(s): Langelaan, D.N., Smith, S.P., Allingham, J.A.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Canadian Institutes of Health Research | Canada | -- |
