Design of a nanomolar affinity ligand to the KIX domain of CBP
Langelaan, D.N., Smith, S.P.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
CREB-binding protein | 87 | Homo sapiens | Mutation(s): 0  Gene Names: CREBBP, CBP EC: 2.3.1.48 (PDB Primary Data), 2.3.1 (UniProt) | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q92793 (Homo sapiens) Explore Q92793  Go to UniProtKB:  Q92793 | |||||
PHAROS:  Q92793 GTEx:  ENSG00000005339  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q92793 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
MLL/c-Myb chimera | 58 | Homo sapiens, Gallus gallus This entity is chimeric | Mutation(s): 0  Gene Names: KMT2A, ALL1, CXXC7, HRX, HTRX, MLL, MLL1, TRX1, MYB EC: 2.1.1.43 (PDB Primary Data), 2.1.1.364 (UniProt), 2.1.1 (UniProt) | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01103 (Gallus gallus) Explore P01103  Go to UniProtKB:  P01103 | |||||
Find proteins for Q03164 (Homo sapiens) Explore Q03164  Go to UniProtKB:  Q03164 | |||||
PHAROS:  Q03164 GTEx:  ENSG00000118058  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Groups | Q03164P01103 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GOL Query on GOL | C [auth A], I [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
CL Query on CL | D [auth A] E [auth A] F [auth A] G [auth A] H [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
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a = 119.82 | α = 90 |
b = 119.82 | β = 90 |
c = 50.43 | γ = 120 |
Software Name | Purpose |
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PHENIX | refinement |
iMOSFLM | data reduction |
SCALA | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Canadian Institutes of Health Research (CIHR) | Canada | -- |