Macromolecule Content

Total Structure Weight: 158.73 kDa
Atom Count: 10211
Residue Count: 1221
Unique protein chains: 1

5QSV

PanDDA analysis group deposition -- Crystal Structure of human STAG1 in complex with Z2856434783

DOI: 10.2210/pdb5QSV/pdb
Deposition Group: G_1002084 (changed state)

Classification: TRANSCRIPTION
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2019-05-25 Released: 2019-08-21
Deposition Author(s): Newman, J.A., Katis, V.L., Gavard, A.E., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.76 Å
R-Value Free: 0.264
R-Value Work: 0.198
R-Value Observed: 0.201

wwPDB Validation 3D Report Full Report

Literature

PanDDA analysis group deposition

Newman, J.A., Katis, V.L., Gavard, A.E., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cohesin subunit SA-1	A, B, C, D	339	Homo sapiens	Mutation(s): 0 Gene Names: STAG1, SA1, SCC3
Find proteins for Q8WVM7 (Homo sapiens) Explore Q8WVM7 Go to UniProtKB: Q8WVM7
NIH Common Fund Data Resources
PHAROS: Q8WVM7 GTEx: ENSG00000118007
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
O3G Query on O3G Download Ideal Coordinates CCD File SDF format, chain E [D] MOL2 format, chain E [D]	D	N-benzyl-1-(4-fluorophenyl)methanamine C₁₄ H₁₄ F N SXZSRGKJZKOZRP-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.76 Å
R-Value Free: 0.264
R-Value Work: 0.198
R-Value Observed: 0.201
Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 66.443	α = 95.13
b = 71.748	β = 99.21
c = 118.782	γ = 115.27

Software Package:

Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
REFMAC	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2019-05-25
Released Date: 2019-08-21

Deposition Author(s):

Arrowsmith, C.H.

Revision History

Version 1.0: 2019-08-21
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.