5QRZ

PanDDA analysis group deposition -- Crystal Structure of human Brachyury in complex with Z1998104358


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.96 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.205 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
T-box transcription factor T
A
172Homo sapiensMutation(s): 0 
Gene Names: TBXT (T)
Find proteins for O15178 (Homo sapiens)
Go to UniProtKB:  O15178
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NZ7
Query on NZ7

Download SDF File 
Download CCD File 
A
(5R)-N,N-dimethyl-2,9-dioxa-6-azaspiro[4.5]decane-6-carboxamide
C10 H18 N2 O3
RZCFMNWZMOAPRJ-SNVBAGLBSA-N
 Ligand Interaction
CD
Query on CD

Download SDF File 
Download CCD File 
A
CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.96 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.205 
  • Space Group: P 41 2 2
Unit Cell:
Length (Å)Angle (°)
a = 59.880α = 90.00
b = 59.880β = 90.00
c = 109.910γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
PDB_EXTRACTdata extraction
REFMACrefinement
REFMACphasing
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-07-10
    Type: Initial release