5QIM

TGF-BETA RECEPTOR TYPE 1 KINASE DOMAIN (T204D) IN COMPLEX WITH N-{4-[3-(5-METHOXYPYRIDIN-2-YL)-1H-PYRROLO[3,2-B] PYRIDIN-2-YL]PYRIDIN-2-YL}ACETAMIDE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.168 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Discovery of 4-Azaindole Inhibitors of TGF beta RI as Immuno-oncology Agents.

Zhang, Y.Zhao, Y.Tebben, A.J.Sheriff, S.Ruzanov, M.Fereshteh, M.P.Fan, Y.Lippy, J.Swanson, J.Ho, C.P.Wautlet, B.S.Rose, A.Parrish, K.Yang, Z.Donnell, A.F.Zhang, L.Fink, B.E.Vite, G.D.Augustine-Rauch, K.Fargnoli, J.Borzilleri, R.M.

(2018) ACS Med Chem Lett 9: 1117-1122


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
TGF-beta receptor type-1
A
306Homo sapiensMutation(s): 0 
Gene Names: TGFBR1 (ALK5, SKR4)
EC: 2.7.11.30
Find proteins for P36897 (Homo sapiens)
Go to Gene View: TGFBR1
Go to UniProtKB:  P36897
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
J2Y
Query on J2Y

Download SDF File 
Download CCD File 
A
N-{4-[3-(5-methoxypyridin-2-yl)-1H-pyrrolo[3,2-b]pyridin-2-yl]pyridin-2-yl}acetamide
C20 H17 N5 O2
VRPRBQAJAQCSCW-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.168 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 42.010α = 90.00
b = 77.800β = 90.00
c = 90.270γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
BUSTERrefinement
Aimlessdata scaling
XDSdata reduction
AMoREphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-08-05 
  • Released Date: 2018-10-31 
  • Deposition Author(s): Sheriff, S.

Revision History 

  • Version 1.0: 2018-10-31
    Type: Initial release
  • Version 1.1: 2018-12-26
    Type: Data collection, Database references