5QIG

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of HAO1 in complex with Z1407672867


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.42 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.155 
  • R-Value Observed: 0.157 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands)

MacKinnon, S.Bezerra, G.A.Krojer, T.Bradley, A.R.Talon, R.Brandao-Neto, J.Douangamath, A.von Delft, F.Arrowsmith, C.H.Edwards, A.Bountra, C.Oppermann, U.Brennan, P.E.Yue, W.W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hydroxyacid oxidase 1
A
369Homo sapiensMutation(s): 0 
Gene Names: HAO1GOX1HAOX1
EC: 1.1.3.15
Find proteins for Q9UJM8 (Homo sapiens)
Go to UniProtKB:  Q9UJM8
NIH Common Fund Data Resources
PHAROS  Q9UJM8
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FMN
Query on FMN

Download CCD File 
A
FLAVIN MONONUCLEOTIDE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
 Ligand Interaction
GWP
Query on GWP

Download CCD File 
A
2-cyclopropyl-1~{H}-imidazole-4-carboxamide
C7 H9 N3 O
ZIJDZTAYMWKMQH-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.42 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.155 
  • R-Value Observed: 0.157 
  • Space Group: I 4
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 97.54α = 90
b = 97.54β = 90
c = 80.646γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
REFMACphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-07-18
    Type: Initial release
  • Version 1.1: 2018-08-15
    Changes: Data collection, Database references