5QID

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of HAO1 in complex with Z1787627869


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.198 
  • R-Value Work: 0.180 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands)

MacKinnon, S.Bezerra, G.A.Krojer, T.Bradley, A.R.Talon, R.Brandao-Neto, J.Douangamath, A.von Delft, F.Arrowsmith, C.H.Edwards, A.Bountra, C.Oppermann, U.Brennan, P.E.Yue, W.W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hydroxyacid oxidase 1
A
369Homo sapiensMutation(s): 0 
Gene Names: HAO1 (GOX1, HAOX1)
EC: 1.1.3.15
Find proteins for Q9UJM8 (Homo sapiens)
Go to Gene View: HAO1
Go to UniProtKB:  Q9UJM8
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FMN
Query on FMN

Download SDF File 
Download CCD File 
A
FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
 Ligand Interaction
GWY
Query on GWY

Download SDF File 
Download CCD File 
A
5-chloranyl-~{N}-methyl-~{N}-[[(3~{S})-oxolan-3-yl]methyl]pyrimidin-4-amine
C10 H14 Cl N3 O
OYKZBUOZAYBEHE-QMMMGPOBSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.198 
  • R-Value Work: 0.180 
  • Space Group: I 4
Unit Cell:
Length (Å)Angle (°)
a = 97.487α = 90.00
b = 97.487β = 90.00
c = 80.388γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
PDB_EXTRACTdata extraction
REFMACphasing
XDSdata reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-07-18
    Type: Initial release
  • Version 1.1: 2018-08-15
    Type: Data collection, Database references