5QHM

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of human FAM83B in complex with OX-145


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.202 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands)

Pinkas, D.M.Bufton, J.C.Fox, A.E.Talon, R.Krojer, T.Douangamath, A.Collins, P.Zhang, R.von Delft, F.Bountra, C.Arrowsmith, C.H.Edwards, A.Bullock, A.N.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protein FAM83B
A
180Homo sapiensMutation(s): 0 
Gene Names: FAM83B (C6orf143)
Find proteins for Q5T0W9 (Homo sapiens)
Go to Gene View: FAM83B
Go to UniProtKB:  Q5T0W9
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GQA
Query on GQA

Download SDF File 
Download CCD File 
A
1-methyl-3-oxidanyl-pyridine-2-thione
C6 H7 N O S
SQEXIHSVVCJZTQ-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.202 
  • Space Group: P 41 2 2
Unit Cell:
Length (Å)Angle (°)
a = 50.600α = 90.00
b = 50.600β = 90.00
c = 153.268γ = 90.00
Software Package:
Software NamePurpose
REFMACphasing
XDSdata reduction
Aimlessdata scaling
PDB_EXTRACTdata extraction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-12-19
    Type: Initial release