5QHI

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of human FAM83B in complex with FMOPL000271a


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.174 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands)

Pinkas, D.M.Bufton, J.C.Fox, A.E.Talon, R.Krojer, T.Douangamath, A.Collins, P.Zhang, R.von Delft, F.Bountra, C.Arrowsmith, C.H.Edwards, A.Bullock, A.N.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protein FAM83B
A, B
180Homo sapiensMutation(s): 0 
Gene Names: FAM83B (C6orf143)
Find proteins for Q5T0W9 (Homo sapiens)
Go to Gene View: FAM83B
Go to UniProtKB:  Q5T0W9
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
IOD
Query on IOD

Download SDF File 
Download CCD File 
A
IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
GOJ
Query on GOJ

Download SDF File 
Download CCD File 
A, B
ethyl 1~{H}-pyrazole-4-carboxylate
C6 H8 N2 O2
KACZQOKEFKFNDB-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.174 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 37.470α = 90.00
b = 74.220β = 96.29
c = 63.050γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
PDB_EXTRACTdata extraction
REFMACphasing
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-12-19
    Type: Initial release