5OV3

Structure of the RbBP5 beta-propeller domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.271 
  • R-Value Work: 0.196 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

The structure of the RbBP5 beta-propeller domain reveals a surface with potential nucleic acid binding sites.

Mittal, A.Hobor, F.Zhang, Y.Martin, S.R.Gamblin, S.J.Ramos, A.Wilson, J.R.

(2018) Nucleic Acids Res. 46: 3802-3812


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Retinoblastoma-binding protein 5
A, B
381Mus musculusMutation(s): 0 
Gene Names: Rbbp5
Find proteins for Q8BX09 (Mus musculus)
Go to UniProtKB:  Q8BX09
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Retinoblastoma-binding protein 5
C
6Mus musculusMutation(s): 0 
Gene Names: Rbbp5
Find proteins for Q8BX09 (Mus musculus)
Go to UniProtKB:  Q8BX09
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PG4
Query on PG4

Download SDF File 
Download CCD File 
B
TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
 Ligand Interaction
PGE
Query on PGE

Download SDF File 
Download CCD File 
A
TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.271 
  • R-Value Work: 0.196 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 56.809α = 90.00
b = 71.897β = 90.00
c = 178.269γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
PHASERphasing
PHENIXrefinement
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Francis Crick InstituteUnited KingdomFC001078

Revision History 

  • Version 1.0: 2018-03-28
    Type: Initial release
  • Version 1.1: 2018-06-27
    Type: Data collection, Database references