5OUP

Structure of TgPLP1 MACPF domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.191 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Structures of monomeric and oligomeric forms of theToxoplasma gondiiperforin-like protein 1.

Ni, T.Williams, S.I.Rezelj, S.Anderluh, G.Harlos, K.Stansfeld, P.J.Gilbert, R.J.C.

(2018) Sci Adv 4: eaaq0762-eaaq0762


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Perforin-like protein 1
A
356Toxoplasma gondii (strain ATCC 50861 / VEG)Mutation(s): 0 
Find proteins for V5BCL0 (Toxoplasma gondii (strain ATCC 50861 / VEG))
Go to UniProtKB:  V5BCL0
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAG
Query on NAG

Download SDF File 
Download CCD File 
A
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.191 
  • Space Group: P 65
Unit Cell:
Length (Å)Angle (°)
a = 104.860α = 90.00
b = 104.860β = 90.00
c = 52.010γ = 120.00
Software Package:
Software NamePurpose
PHENIXrefinement
xia2data reduction
xia2data scaling
PHENIXphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (United Kingdom)United KingdomMR/N000331/1

Revision History 

  • Version 1.0: 2018-04-11
    Type: Initial release
  • Version 1.1: 2018-04-18
    Type: Data collection, Derived calculations
  • Version 1.2: 2018-05-23
    Type: Data collection, Database references
  • Version 1.3: 2019-04-03
    Type: Data collection, Source and taxonomy