5OUK

Crystal structure of human AKR1B1 complexed with NADP+ and compound 41


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.959 Å
  • R-Value Free: 0.149 
  • R-Value Work: 0.135 

wwPDB Validation 3D Report Full Report


This is version 2.0 of the entry. See complete history

Literature

Design, synthesis, structure-activity relationships and X-ray structural studies of novel 1-oxopyrimido[4,5-c]quinoline-2-acetic acid derivatives as selective and potent inhibitors of human aldose reductase.

Crespo, I.Gimenez-Dejoz, J.Porte, S.Cousido-Siah, A.Mitschler, A.Podjarny, A.Pratsinis, H.Kletsas, D.Pares, X.Ruiz, F.X.Metwally, K.Farres, J.

(2018) Eur J Med Chem 152: 160-174


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Aldose reductase
A
316Homo sapiensMutation(s): 0 
Gene Names: AKR1B1 (ALDR1, ALR2)
EC: 1.1.1.300, 1.1.1.372, 1.1.1.54
Find proteins for P15121 (Homo sapiens)
Go to Gene View: AKR1B1
Go to UniProtKB:  P15121
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAP
Query on NAP

Download SDF File 
Download CCD File 
A
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
 Ligand Interaction
AVT
Query on AVT

Download SDF File 
Download CCD File 
A
2-[9-fluoranyl-5-(4-methoxyphenyl)-3-methyl-1-oxidanylidene-pyrimido[4,5-c]quinolin-2-yl]ethanoic acid
C21 H16 F N3 O4
DFNWHBVRWCMUBN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.959 Å
  • R-Value Free: 0.149 
  • R-Value Work: 0.135 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 40.286α = 76.34
b = 47.076β = 67.52
c = 47.304γ = 76.76
Software Package:
Software NamePurpose
HKL-2000data scaling
PHENIXrefinement
HKL-2000data reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-05-09
    Type: Initial release
  • Version 2.0: 2019-03-06
    Type: Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary