5OPH

G-quadruplex structure of DNA oligonucleotide containing GGGGCC repeats linked to ALS and FTD

  • Classification: DNA
  • Organism(s): Homo sapiens

  • Deposited: 2017-08-09 Released: 2018-08-29 
  • Deposition Author(s): Brcic, J., Plavec, J.
  • Funding Organization(s): Slovenian Research Agency 

Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

NMR structure of a G-quadruplex formed by four d(G4C2) repeats: insights into structural polymorphism.

Brcic, J.Plavec, J.

(2018) Nucleic Acids Res. 46: 11605-11617


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*(BGM)P*G)-3')A22Homo sapiens
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
BGM
Query on BGM
A
DNA LINKINGC10 H13 Br N5 O7 PDG
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2017-08-09 
  • Released Date: 2018-08-29 
  • Deposition Author(s): Brcic, J., Plavec, J.

Funding OrganizationLocationGrant Number
Slovenian Research AgencySloveniaP1-0242

Revision History 

  • Version 1.0: 2018-08-29
    Type: Initial release
  • Version 1.1: 2018-10-24
    Type: Data collection, Database references
  • Version 1.2: 2018-12-19
    Type: Data collection, Database references