5OOH

Human biliverdin IX beta reductase: NADP/Erythrosin extra bluish ternary complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.147 
  • R-Value Work: 0.122 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

In silicoand crystallographic studies identify key structural features of biliverdin IX beta reductase inhibitors having nanomolar potency.

Nesbitt, N.M.Zheng, X.Li, Z.Manso, J.A.Yen, W.Y.Malone, L.E.Ripoll-Rozada, J.Pereira, P.J.B.Mantle, T.J.Wang, J.Bahou, W.F.

(2018) J. Biol. Chem. 293: 5431-5446

  • DOI: 10.1074/jbc.RA118.001803
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Heme cytotoxicity is minimized by a two-step catabolic reaction that generates biliverdin (BV) and bilirubin (BR) tetrapyrroles. The second step is regulated by two non-redundant biliverdin reductases (IXα (BLVRA) and IXβ (BLVRB)), which retain isome ...

    Heme cytotoxicity is minimized by a two-step catabolic reaction that generates biliverdin (BV) and bilirubin (BR) tetrapyrroles. The second step is regulated by two non-redundant biliverdin reductases (IXα (BLVRA) and IXβ (BLVRB)), which retain isomeric specificity and NAD(P)H-dependent redox coupling linked to BR's antioxidant function. Defective BLVRB enzymatic activity with antioxidant mishandling has been implicated in metabolic consequences of hematopoietic lineage fate and enhanced platelet counts in humans. We now outline an integrated platform of in silico and crystallographic studies for the identification of an initial class of compounds inhibiting BLVRB with potencies in the nanomolar range. We found that the most potent BLVRB inhibitors contain a tricyclic hydrocarbon core structure similar to the isoalloxazine ring of flavin mononucleotide and that both xanthene- and acridine-based compounds inhibit BLVRB's flavin and dichlorophenolindophenol (DCPIP) reductase functions. Crystallographic studies of ternary complexes with BLVRB-NADP + -xanthene-based compounds confirmed inhibitor binding adjacent to the cofactor nicotinamide and interactions with the Ser-111 side chain. This residue previously has been identified as critical for maintaining the enzymatic active site and cellular reductase functions in hematopoietic cells. Both acridine- and xanthene-based compounds caused selective and concentration-dependent loss of redox coupling in BLVRB-overexpressing promyelocytic HL-60 cells. These results provide promising chemical scaffolds for the development of enhanced BLVRB inhibitors and identify chemical probes to better dissect the role of biliverdins, alternative substrates, and BLVRB function in physiologically relevant cellular contexts.


    Organizational Affiliation

    The RIKEN SPring-8 Center, 1-1-1 Koto, Sayo-cho, Sato-gun, Hyogo, 678-5248, Japan.,University of Basel, Biozentrum, CH-4056, Basel, Switzerland.,College of Life Science and Technology, Huazhong Agricultural University, Wuhan, Hubei 430070, China; State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, Hubei 430070, China. Electronic address: hejin@mail.hzau.edu.cn.,Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw 02-106, Poland; Faculty of Agriculture and Biology, Warsaw University of Life Sciences, Warsaw 02-776, Poland.,Department of Biochemistry and Molecular Biology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma (J.M.B., M.L.W., A.M.R., A.A.P.) and School of Biological Sciences, University of Auckland, Auckland, New Zealand (D.L.H.).,Departamento de Química, Universidad de La Rioja, Centro de Investigación en Síntesis Química, E-26006, Logroño, Spain.,the i3S - Instituto de Investigação e Inovação em Saúde, Universidade do Porto, 4200-135 Porto, Portugal, and.,Cambridge Graphene Centre, University of Cambridge, 9 JJ Thomson Avenue, Cambridge, CB3 OFA, UK.,Infection and Immunity Program, Department of Microbiology, Monash University, Clayton, 3800, Australia.,Cardiovascular Research Institute, University of California at San Francisco, San Francisco, CA, USA. lijunliuks@gmail.com.,IGF, Univ Montpellier, CNRS, INSERM, 34090 Montpellier, France.,DLX Scientific, Lawrence, KS, USA. lijunliuks@gmail.com.,Howard Hughes Medical Institute, and Departments of Molecular and Cellular Physiology, and Structural Biology, Program in Immunology, Stanford University School of Medicine, Stanford, California, USA.,College of Life Science and Technology, Huazhong Agricultural University, Wuhan, Hubei 430070, China. Electronic address: zoutingting@mail.hzau.edu.cn.,Department of Pharmaceutical Chemistry, University of Debrecen, 4032, Debrecen, Hungary.,Dept. of Biological Chemistry, John Innes Centre, Norwich Research Park, Norwich, United Kingdom.,Department of Anesthesiology, Stony Brook University, Stony Brook, NY, 11794-8480, United states.,Department of Pharmacy and Biotechnology, University of Bologna, Viale Giuseppe Fanin 40, 40127, Bologna, Italy.,Dipartimento di Scienze Matematiche, Fisiche e Informatiche, Università degli Studi di Parma, Parco Area delle Scienze 7/A, 43124, Parma, Italy.,NTU Institute of Structural Biology, Nanyang Technological University, Singapore, Singapore. sbhushan@ntu.edu.sg.,Cryo-EM Structural Biology Laboratory, Van Andel Research Institute, Grand Rapids, MI, 49503, United states.,Department of Pharmaceutical Chemistry, University of California at San Francisco, San Francisco, CA, USA. xiaokun.shu@ucsf.edu.,Research Center Borstel , Leibniz Lung Center , Parkallee 22 , Borstel D-23845 , Germany.,the State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, ChangChun, Jilin 130022, China.,Department of Biology and Konstanz Research School Chemical Biology, University of Konstanz, Universitätsstrasse 10, 78457, Konstanz, Germany.,Biostructural Mechanism Laboratory, RIKEN, SPring-8 Center, 1-1-1 Kouto, Sayo, Hyogo 679-5148, Japan.,Department of Molecular and Cellular Biology , University of Guelph , Guelph , Ontario N1G 2W1 , Canada.,Astbury Centre for Structural and Molecular Biology, University of Leeds, LS2 9JT Leeds, United Kingdom.,Center for Computational Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, 305-8577, Japan.,Institute of Scientific and Industrial Research, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka, 567-0047, Japan.,Department of Pharmaceutical Chemistry , University of California San Francisco , San Francisco , California 94158 , United States.,School of Biological Sciences, Nanyang Technological University, Singapore, Singapore. sbhushan@ntu.edu.sg.,Dipartimento di Scienze Matematiche, Fisiche e Informatiche, Università degli Studi di Parma, Parco Area delle Scienze 7/A, 43124, Parma, Italy. stefania.abbruzzetti@unipr.it.,Department of Molecular Medicine, University of South Florida Morsani College of Medicine, 12901 Bruce B. Downs Blvd., Tampa, Florida 33612, United States.,IHAP, Université de Toulouse, INRA, ENVT, Toulouse, France.,Swiss Light Source, Paul Scherrer Institute, Villigen, Switzerland.,Department of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.,Pharmaceutical Frontier Research Laboratories, Central Pharmaceutical Research Institute, Japan Tobacco Inc., 1-13-2, Fukuura, Kanazawa-Ku, Yokohama, Kanagawa, 236-0004, Japan. masato.noguchi@jt.com.,Institut de Biologie Structurale (IBS), Univ. Grenoble Alpes, CEA, CNRS, 38044, Grenoble, France.,From the Institute for Protein Design, chris.bahl@proteininnovation.org.,the Institute for Protein Innovation, Boston, Massachusetts 02115.,Dipartimento di Scienze Chirurgiche, Università di Cagliari, Cagliari, 09100, Italy.,CBS, Univ Montpellier, CNRS, INSERM, 34090 Montpellier, France. Electronic address: gilles.labesse@cbs.cnrs.fr.,Center for BioImaging Sciences, National University of Singapore, Singapore, Singapore.,Swiss Light Source, Paul Scherrer Institute, Villigen, Switzerland. bernd.schmitt@psi.ch.,Department of Biomedical Sciences (Unidad Asociada IQM,CSIC) and Instituto de Investigación Quimica "Andrés M. del Río" (IQAR), University of Alcalá, Unidad Asociada CSIC, 28805 Alcalá de Henares, Madrid, Spain.,Biostructural Mechanism Laboratory, RIKEN, SPring-8 Center, 1-1-1 Kouto, Sayo, Hyogo 679-5148, Japan; Advanced Electron Microscope Development Unit, RIKEN-JEOL Collaboration Center, RIKEN Baton Zone Program, 1-1-1 Kouto, Sayo, Hyogo 679-5148, Japan. Electronic address: yone@spring8.or.jp.,Department of Chemistry , University of California, Irvine , Irvine , California 92697-2025 , United States.,Cell and Molecular Sciences Group, Dundee Effector Consortium, James Hutton Institute, Invergowrie, Dundee, United Kingdom.,Institute for Molecular Bioscience, The University of Queensland, Brisbane 4072, Australia. peta.harvey@imb.uq.edu.au.,Graduate School of Pharmaceutical Sciences, Osaka University, 1-6 Yamadaoka, Suita, 565-0871, Osaka, Japan.,Graduate School of Natural Science and Technology, Kanazawa University, Kakuma, Kanazawa, Ishikawa, 920-1192, Japan.,Department of Chemistry , Box H, Brown University , Providence , Rhode Island 02912-9108 , United States.,CRBM, "Equipe Labellisée Ligue Contre le Cancer", Univ Montpellier, CNRS, 34000 Montpellier, France.,Howard Hughes Medical Institute, University of Washington, Seattle, Washington 98195.,School of Chemistry, University of Leeds, LS2 9JT Leeds, United Kingdom.,Instituto de Biocomputación y Fisica de Sistemas Complejos (BIFI), BIFI-IQFR (CSIC) Joint Unit, Universidad de Zaragoza, 50018, Zaragoza, Spain.,National Institute of Public Health-National Institute of Hygiene, Chocimska 24, PL-00791, Warsaw, Poland.,Structural Genomics Consortium, Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt, Frankfurt am Main, Germany.,Instituto de Química Médica (IQM,CSIC), Juan de la Cierva 3, 28006, Madrid, Spain.,Faculty of Agriculture and Biology, Warsaw University of Life Sciences, Warsaw 02-776, Poland.,Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA; Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.,the IBMC - Instituto de Biologia Molecular e Celular, Universidade do Porto, 4200-135 Porto, Portugal.,Department of Biothermodynamics and Drug Design, Institute of Biotechnology, Vilnius University, Vilnius, Lithuania.,the Department of Biochemistry, Trinity College, Dublin 2, Ireland.,Institute of Low Temperature Science, Hokkaido University Kita19-Nishi8, Kita-ku, 060-0819, Sapporo, Japan.,Institute for Molecular Bioscience, The University of Queensland, Brisbane 4072, Australia. nyoman.kurniawan@cai.uq.edu.au.,Howard Hughes Medical Institute, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, New York 10065, and.,Institut Pasteur de Montevideo, Mataojo 2020, 11400, Montevideo, Uruguay.,Department of Molecular Biology and Biotechnology, Firth Court, University of Sheffield, S10 2TN Sheffield, United Kingdom.,School of Biology, Faculty of Biology Medicine and Health, Michael Smith Building, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK.,CBS, Univ Montpellier, CNRS, INSERM, 34090 Montpellier, France.,Savaid Medical School, University of Chinese Academy of Sciences, Beijing, 101408, China.,School of Biomedical Sciences, Faculty of Biological Sciences, University of Leeds, LS2 9JT Leeds, United Kingdom; s.p.muench@leeds.ac.uk.,Departments of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, 11794-5215, United states; Institute of Chemical Biology and Drug Discovery, Stony Brook University, Stony Brook, NY, 11794-3400, United states.,Fundación ARAID, 50018, Zaragoza, Spain.,Department of Chemistry , University of Natural Resources and Life Sciences , A-1190 Vienna , Austria.,Department of Biochemistry, and.,Department of Pharmaceutical Chemistry, University of California at San Francisco, San Francisco, CA, USA. william.degrado@ucsf.edu.,Department of Biology, Indiana University Bloomington, Bloomington, IN, 47405, USA.,eBIC, Diamond Light Source Ltd, Diamond House, Harwell Science & Innovation Campus, Oxfordshire, Didcot, OX11 0DE, UK.,University of Chinese Academy of Sciences, Beijing, 101408, China.,NIST/IBBR, 9600 Gudelsky Drive, Rockville, MD 20850, USA.,Centro de Investigaciones Biológicas (CIB,CSIC), Ramiro de Maeztu 9, 28040, Madrid, Spain.,Department of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA; Howard Hughes Medical Institute, Dallas, TX 75390, USA; Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.,INRA, UMR1282 Infectiologie et Santé Publique, F-37380, Nouzilly, France.,Applied Mathematics and Statistics, Stony Brook University, Stony Brook, NY, 11794-3600, United states.,Johnson & Johnson Pharmaceutical Research and Development, L.L.C, 3210 Merryfield Row, San Diego, California 92121, United States.,German Cancer Consortium (DKTK), German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120, Heidelberg, Germany.,Pharmaceutical Frontier Research Laboratories, Central Pharmaceutical Research Institute, Japan Tobacco Inc., 1-13-2, Fukuura, Kanazawa-Ku, Yokohama, Kanagawa, 236-0004, Japan. tsuyoshi.adachi@jt.com.,New England Biolabs, 240 County Road, Ipswich, MA, 01938, USA.,Department of Nutrition, Food Sciences and Gastronomy, Faculty of Pharmacy and Food Sciences and Institute of Biomedicine (IBUB), University of Barcelona, Avda. Prat de la Riba 171, Santa Coloma de Gramenet, Spain.,Fachbereich Biologie, Universität Konstanz, Konstanz, Germany.,Copenhagen Center for Glycomics, Department of Cellular and Molecular Medicine, School of Dentistry, University of Copenhagen, Copenhagen, Denmark.,School of Biomedical Sciences, Faculty of Biological Sciences, University of Leeds, LS2 9JT Leeds, United Kingdom.,From the Departments of Medicine and.,Department of Protein-DNA Interactions, Institute of Biotechnology, Vilnius University, Vilnius, Lithuania.,Department of Chemistry and Biochemistry , University of Wisconsin-Milwaukee , Milwaukee , Wisconsin 53201 , United States.,the Structural Biology Program and.,Department of Chemistry &Biochemistry and the Harper Cancer Research Institute, University of Notre Dame, Notre Dame, Indiana, USA.,Section of Microbiology and MRC Centre for Molecular Bacteriology and Infection, Imperial College London, London, SW7 2DD, UK.,UCIBIO, REQUIMTE, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516, Caparica, Portugal.,Instituto de Química Médica (IQM,CSIC), Juan de la Cierva 3, 28006, Madrid, Spain. empriego@iqm.csic.es.,Departments of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, 11794-5215, United states; Department of Anesthesiology, Stony Brook University, Stony Brook, NY, 11794-8480, United states; Institute of Chemical Biology and Drug Discovery, Stony Brook University, Stony Brook, NY, 11794-3400, United states.,Institute for Cell and Molecular Biosciences, University of Newcastle, Newcastle upon Tyne, NE2 4HH, UK.,Department of Biochemistry, University of Oxford, Oxford, OX1 3QU, UK.,From the Department of Biology, Washington University, St. Louis, Missouri 63130 and jjez@wustl.edu.,Applied Mathematics and Statistics, Stony Brook University, Stony Brook, NY, 11794-3600, United states; Institute of Chemical Biology and Drug Discovery, Stony Brook University, Stony Brook, NY, 11794-3400, United states.,FG11 Division of Enteropathogenic Bacteria and Legionella, Robert Koch Institute, Burgstrasse 37, 38855, Wernigerode, Germany.,School of Biological Sciences, Nanyang Technological University, Singapore, Singapore.,CIC bioGUNE, Bizkaia Technology Park, Building 801A, 48170, Derio, Spain.,Department of Picobiology, Graduate School of Life Science, University of Hyogo, 3-2-1 Koto, Kamigori-cho, Ako-gun, Hyogo, 678-1297, Japan.,School of Chemistry, Monash University, Clayton, 3800, Australia.,Department of Chemistry, Stony Brook University, Stony Brook, NY, 11794-3400, United states; Institute of Chemical Biology and Drug Discovery, Stony Brook University, Stony Brook, NY, 11794-3400, United states. Electronic address: iwao.ojima@stonybrook.edu.,College of Life Science and Technology, Huazhong Agricultural University, Wuhan, Hubei 430070, China; National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research, Huazhong Agricultural University, Wuhan, Hubei 430070, China.,Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA; Howard Hughes Medical Institute, Dallas, TX 75390, USA; Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.,Institute for Molecular Bioscience, The University of Queensland, Brisbane 4072, Australia. Dorien.VanLysebetten@UGent.be.,RIKEN SPring-8 Center, 1-1-1 Kouto, Sayo, Hyogo 679-5148, Japan.,School of Molecular and cellular Biology, Faculty of Biological Sciences, University of Leeds, LS2 9JT Leeds, United Kingdom.,Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds, United Kingdom.,Ikerbasque, Basque Foundation for Science, Maria Diaz de Haro 13, 48009, Bilbao, Spain.,Illawarra Health and Medical Research Institute, University of Wollongong, Wollongong 2522, Australia. jeffreym@uow.edu.au.,Department of Chemical Sciences, University of Padova, via Marzolo 1, 35131, Padova, Italy. massimo.bellanda@unipd.it.,Departments of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, 11794-5215, United states.,Human Health Therapeutics Portfolio , National Research Council Canada , 100 Sussex Drive , Ottawa , Ontario , Canada K1A 0R6.,Institute for Molecular Bioscience, The University of Queensland, Brisbane 4072, Australia. t.durek@uq.edu.au.,Dipartimento di Scienze degli Alimenti e del Farmaco, Università degli Studi di Parma, Parco Area delle Scienze 27/A, 43124, Parma, Italy.,Institute for Molecular Bioscience, The University of Queensland, Brisbane 4072, Australia. d.craik@imb.uq.edu.au.,Banting and Best Department of Medical Research and Department of Molecular Genetics, University of Toronto, Terrence Donnelly Centre for Cellular &Biomolecular Research, Toronto, Ontario, Canada.,Department of Organic Chemistry, Faculty of Chemistry, University of Łódź, Tamka 12, PL-91403 Łódź, Poland.,Chair of Proteomics and Bioanalytics, Technical University of Munich, Emil-Erlenmeyer-Forum 5, 85354, Freising, Germany.,IFN-CNR, Dipartimento di Fisica, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133, Milano, Italy.,Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory , Stanford University , Menlo Park , California 94025 , United States.,Biological Pharmacological Research Laboratories, Central Pharmaceutical Research Institute, Japan Tobacco Inc., 1-1, Murasaki-cho, Takatsuki, Osaka, 569-1125, Japan.,the Department of Agronomy and Horticulture, University of Nebraska, Lincoln, Nebraska 68588.,Department of Organic Chemistry II, Faculty of Science & Technology, University of the Basque Country, 48940, Leioa, Bizkaia, Spain.,Institute of Scientific and Industrial Research, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka, 567-0047, Japan. nishino@sanken.osaka-u.ac.jp.,Biochemistry, University of Utah, Salt Lake City, Utah 84112.,From the Institute for Protein Design.,College of Life Science and Technology, Huazhong Agricultural University, Wuhan, Hubei 430070, China.,New College of Florida, Sarasota, FL 34243, USA.,Laboratorio de Fisicoquímica Biológica, Instituto de Química Biológica, Facultad de Ciencias, Universidad de la República, Igua 4425, 11400, Montevideo, Uruguay.,Institute for Glycomics, Gold Coast Campus, Griffith University, Queensland, 4222, Australia.,Cardiovascular Research Institute, University of California at San Francisco, San Francisco, CA, USA. xiaokun.shu@ucsf.edu.,Pharmaceutical Frontier Research Laboratories, Central Pharmaceutical Research Institute, Japan Tobacco Inc., 1-13-2, Fukuura, Kanazawa-Ku, Yokohama, Kanagawa, 236-0004, Japan.,Department of Chemistry, University of Pennsylvania, Philadelphia, PA, USA.,Department of Chemistry "Ugo Schiff", University of Florence, Via della Lastruccia 3, 50019, Sesto Fiorentino (FI), Italy.,Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai, Miyagi, 980-8578, Japan.,Department of Biochemistry and Biophysics, University of California at San Francisco, San Francisco, CA, USA.,Illawarra Health and Medical Research Institute, University of Wollongong, Wollongong 2522, Australia. djadams@uow.edu.au.,From the Department of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario N1G 2W1, Canada and.,School of Chemistry, Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK.,Institute for Molecular Bioscience, The University of Queensland, Brisbane 4072, Australia. thomas.dash@imb.uq.edu.au.,Department of Chemical Sciences, University of Padova, via Marzolo 1, 35131, Padova, Italy.,Illawarra Health and Medical Research Institute, University of Wollongong, Wollongong 2522, Australia. rfinolu@uow.edu.au.,Department of Chemistry , Fresno State University , 2555 East San Ramon Avenue, MS SB70 , Fresno , California 93740 , United States.,Molecular Physiology and Biological Physics, University of Virginia School of Medicine, Charlottesville, VA, 22908, USA.,Rega Institute for Medical Research, KU Leuven, Herestraat 49, B-3000, Leuven, Belgium.,From the Department of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario N1G 2W1, Canada and mkimber@uoguelph.ca.,Department of Nutrition, Food Sciences and Gastronomy, Faculty of Pharmacy and Food Sciences and Institute of Biomedicine (IBUB), University of Barcelona, Avda. Prat de la Riba 171, Santa Coloma de Gramenet, Spain. fjluque@ub.edu.,Department of Biochemistry and Molecular Biology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma (J.M.B., M.L.W., A.M.R., A.A.P.) and School of Biological Sciences, University of Auckland, Auckland, New Zealand (D.L.H.) augen-pioszak@ouhsc.edu.,School of Biology, Faculty of Biology Medicine and Health, Michael Smith Building, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK. robert.ford@manchester.ac.uk.,MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK. ccharent@mrc-lmb.cam.ac.uk mwilkin@mrc-lmb.cam.ac.uk kn@mrc-lmb.cam.ac.uk.,Department of Pharmaceutical Chemistry, University of California at San Francisco, San Francisco, CA, USA.,From the Department of Biology, Washington University, St. Louis, Missouri 63130 and.,Department of Chemistry and Konstanz Research School Chemical Biology, University of Konstanz, Universitätsstrasse 10, 7857, Konstanz, Germany.,From the Departments of Medicine and natasha.nesbitt@stonybrook.edu.,CRBM, "Equipe Labellisée Ligue Contre le Cancer", Univ Montpellier, CNRS, 34000 Montpellier, France. Electronic address: serge.roche@crbm.cnrs.fr.,School of Life Sciences, University of Dundee, Dundee, United Kingdom.,From the Departments of Chemistry and.,Dipartimento di Scienze Matematiche, Fisiche e Informatiche, Università degli Studi di Parma, Parco Area delle Scienze 7/A, 43124, Parma, Italy. cristiano.viappiani@unipr.it.,Swiss Light Source, Paul Scherrer Institute, Villigen, Switzerland. meitian.wang@psi.ch.,Institute for Molecular Bioscience, The University of Queensland, Brisbane 4072, Australia. justine.hill1@gmail.com.,Alberta Glycomics Centre and Department of Chemistry, University of Alberta, Edmonton, Alberta T6G 2G2, Canada.,Institut de Biologie Structurale (IBS), Univ. Grenoble Alpes, CEA, CNRS, 38044, Grenoble, France. thibaut.crepin@ibs.fr.,Chemistry and Physics, State University of New York at Stony Brook, Stony Brook, New York 11794-8151, jin.wang.1@stonybrook.edu.,Department CIBIO, University of Trento, via Sommarive 9, 38123, Povo, Italy.,Department of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.,Magnetic Resonance Center (CERM), University of Florence, Via L. Sacconi 6, 50019, Sesto Fiorentino (FI), Italy.,Department of Chemistry, Stony Brook University, Stony Brook, NY, 11794-3400, United states.,Chemical Research Laboratories, Central Pharmaceutical Research Institute, Japan Tobacco Inc., 1-1, Murasaki-cho, Takatsuki, Osaka, 569-1125, Japan.,Integrated Structural Biology Grenoble (ISBG) - UMS 3518 (CNRS-CEA-UJF-EMBL), 38044, Grenoble, France.,Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.,Cardiovascular Research Institute, University of California at San Francisco, San Francisco, CA, USA.,Centre for Bacterial Cell Biology, Institute for Cell and Molecular Biosciences, University of Newcastle, Newcastle upon Tyne, NE2 4AX, UK.,Faculty of Pharmacy and Biochemistry, University of Zagreb, Ante Kovačića 1, Zagreb, Croatia.,Graduate School of Pharmaceutical Sciences, Osaka University, 1-6 Yamadaoka, Suita, 565-0871, Osaka, Japan. nishino@sanken.osaka-u.ac.jp.,Université François Rabelais de Tours, UMR1282 Infectiologie et Santé Publique, F-37000, Tours, France.,Molecular Modeling Section (MMS), Department of Pharmaceutical and Pharmacological Sciences, University of Padova, via Marzolo 5, Padova, Italy.,From the Departments of Chemistry and koehntop@chem.utah.edu.,Department of Biochemistry and Microbiology , University of Victoria , P.O. Box 3055 STN CSC, Victoria , British Columbia , Canada V8P 3P6.,Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw 02-106, Poland.,Orphagen Pharmaceuticals, 11558 Sorrento Valley Road, Suite 4, San Diego, California, 92121, USA.,Molecular Physiology and Biological Physics, University of Virginia School of Medicine, Charlottesville, VA, 22908, USA. jochen_zimmer@virginia.edu.,Center for Biomolecular Magnetic Resonance (BMRZ), Institute for Organic Chemistry and Chemical Biology, Johann Wolfgang Goethe University, Max-von-Laue-Straße 7, 60438, Frankfurt am Main, Germany.,Ramaciotti Centre for Electron Microscopy, Monash University, Clayton, 3800, Australia.,Institute for Pharmaceutical Chemistry, Johann Wolfgang Goethe University, Max-von-Laue-Straße 9, 60438, Frankfurt am Main, Germany.,Institute for Neurodegenerative Diseases, University of California at San Francisco, San Francisco, CA, USA. william.degrado@ucsf.edu.,Max-Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, D-45470, Mülheim an der Ruhr, Germany.,Howard Hughes Medical Institute, Dallas, TX 75390, USA.,Centre de RMN à Très Hauts Champs, Institut des Sciences Analytiques (UMR 5280 - CNRS, ENS Lyon, UCB Lyon 1), Université de Lyon, 5 rue de la Doua, 69100, Villeurbanne, France.,Cardiovascular Research Institute, University of California at San Francisco, San Francisco, CA, USA. william.degrado@ucsf.edu.,Institute for Cell and Molecular Biosciences, University of Newcastle, Newcastle upon Tyne, NE2 4HH, UK. r.lewis@ncl.ac.uk.,Institute for Inorganic Chemistry, Goethe University Frankfurt, Frankfurt am Main, Germany.,College of Life Science and Technology, Huazhong Agricultural University, Wuhan, Hubei 430070, China; State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, Hubei 430070, China.,Laboratory of Biomolecular Research, Division of Biology and Chemistry, Paul Scherrer Institut, 5232, Villigen, Switzerland.,Department of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA; Harold C. Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA; Hamon Center for Regenerative Science and Medicine, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA. Electronic address: vincent.tagliabracci@utsouthwestern.edu.,Institute of Chemical Biology and Drug Discovery, Stony Brook University, Stony Brook, NY, 11794-3400, United states.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Flavin reductase (NADPH)
A
206Homo sapiensMutation(s): 0 
Gene Names: BLVRB (FLR)
EC: 1.5.1.30
Find proteins for P30043 (Homo sapiens)
Go to Gene View: BLVRB
Go to UniProtKB:  P30043
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
NAP
Query on NAP

Download SDF File 
Download CCD File 
A
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
 Ligand Interaction
9ZZ
Query on 9ZZ

Download SDF File 
Download CCD File 
A
Erythrosin
C20 H8 I4 O5
LAINPTZBIXYTIZ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 49.263α = 90.00
b = 40.259β = 90.00
c = 107.231γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
Aimlessdata scaling
PHASERphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-03-07
    Type: Initial release
  • Version 1.1: 2018-03-14
    Type: Database references
  • Version 1.2: 2018-03-21
    Type: Database references
  • Version 1.3: 2018-04-25
    Type: Data collection, Database references