5OFM

Crystal structure of human 3-phosphoglycerate dehydrogenase in complex with 5-amino-1-methyl-1H-indole


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.191 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of human 3-phosphoglycerate dehydrogenase in complex with 5-amino-1-methyl-1H-indole

Unterlass, J.E.Curtin, N.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
D-3-phosphoglycerate dehydrogenase
B, A
223Homo sapiensMutation(s): 0 
Gene Names: PHGDH (PGDH3)
EC: 1.1.1.95
Find proteins for O43175 (Homo sapiens)
Go to Gene View: PHGDH
Go to UniProtKB:  O43175
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
9TT
Query on 9TT

Download SDF File 
Download CCD File 
A, B
1-methylindol-5-amine
C9 H10 N2
PGTSGPCXPIFQEL-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.191 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 43.342α = 97.91
b = 45.860β = 110.74
c = 56.175γ = 106.39
Software Package:
Software NamePurpose
REFMACrefinement
xia2data reduction
PHASERphasing
xia2data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Cancer Research UKUnited KingdomC2115/A21421

Revision History 

  • Version 1.0: 2017-08-16
    Type: Initial release
  • Version 1.1: 2018-04-18
    Type: Data collection, Database references