5OFH

Cu nitrite reductase serial data at varying temperatures RT 0.15MGy


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.58 Å
  • R-Value Free: 0.178 
  • R-Value Work: 0.154 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Enzyme catalysis captured using multiple structures from one crystal at varying temperatures.

Horrell, S.Kekilli, D.Sen, K.Owen, R.L.Dworkowski, F.S.N.Antonyuk, S.V.Keal, T.W.Yong, C.W.Eady, R.R.Hasnain, S.S.Strange, R.W.Hough, M.A.

(2018) IUCrJ 5: 283-292


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Copper-containing nitrite reductase
A
334Achromobacter cycloclastesMutation(s): 0 
Gene Names: nirK
EC: 1.7.2.1
Find proteins for P25006 (Achromobacter cycloclastes)
Go to UniProtKB:  P25006
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACT
Query on ACT

Download SDF File 
Download CCD File 
A
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
NO2
Query on NO2

Download SDF File 
Download CCD File 
A
NITRITE ION
N O2
IOVCWXUNBOPUCH-UHFFFAOYSA-M
 Ligand Interaction
CU
Query on CU

Download SDF File 
Download CCD File 
A
COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.58 Å
  • R-Value Free: 0.178 
  • R-Value Work: 0.154 
  • Space Group: P 21 3
Unit Cell:
Length (Å)Angle (°)
a = 96.238α = 90.00
b = 96.238β = 90.00
c = 96.238γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
DIALSdata collection
Aimlessdata scaling
REFMACphasing
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/M022714/1
Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/M020924/1
Leverhulme TrustUnited KingdomRPG-2014-355

Revision History 

  • Version 1.0: 2018-05-23
    Type: Initial release
  • Version 1.1: 2018-10-03
    Type: Data collection, Derived calculations