5OCH

The crystal structure of human ABCB8 in an outward-facing state


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.4 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.231 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ATP-binding cassette sub-family B member 8, mitochondrial
A, C, D
612Homo sapiensMutation(s): 0 
Gene Names: ABCB8 (MABC1)
Find proteins for Q9NUT2 (Homo sapiens)
Go to Gene View: ABCB8
Go to UniProtKB:  Q9NUT2
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
ATP-binding cassette sub-family B member 8, mitochondrial
B
612Homo sapiensMutation(s): 0 
Gene Names: ABCB8 (MABC1)
Find proteins for Q9NUT2 (Homo sapiens)
Go to Gene View: ABCB8
Go to UniProtKB:  Q9NUT2
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
ATP-binding cassette sub-family B member 8, mitochondrial
E
612Homo sapiensMutation(s): 0 
Gene Names: ABCB8 (MABC1)
Find proteins for Q9NUT2 (Homo sapiens)
Go to Gene View: ABCB8
Go to UniProtKB:  Q9NUT2
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
ATP-binding cassette sub-family B member 8, mitochondrial
F, G
612Homo sapiensMutation(s): 0 
Gene Names: ABCB8 (MABC1)
Find proteins for Q9NUT2 (Homo sapiens)
Go to Gene View: ABCB8
Go to UniProtKB:  Q9NUT2
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
ATP-binding cassette sub-family B member 8, mitochondrial
H
612Homo sapiensMutation(s): 0 
Gene Names: ABCB8 (MABC1)
Find proteins for Q9NUT2 (Homo sapiens)
Go to Gene View: ABCB8
Go to UniProtKB:  Q9NUT2
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
Y01
Query on Y01

Download SDF File 
Download CCD File 
A, B, D, E, F, G, H
CHOLESTEROL HEMISUCCINATE
C31 H50 O4
WLNARFZDISHUGS-MIXBDBMTSA-N
 Ligand Interaction
ADP
Query on ADP

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
YCM
Query on YCM
A, B, C, D, E, F, G
L-PEPTIDE LINKINGC5 H10 N2 O3 SCYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.4 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.231 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 181.080α = 90.00
b = 98.500β = 90.50
c = 214.870γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
BUSTERrefinement
XDSdata reduction
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom--

Revision History 

  • Version 1.0: 2018-07-25
    Type: Initial release