5O8M

Crystal structure of the MmI1 YTH domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.179 
  • R-Value Work: 0.157 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Selective termination of lncRNA transcription promotes heterochromatin silencing and cell differentiation.

Touat-Todeschini, L.Shichino, Y.Dangin, M.Thierry-Mieg, N.Gilquin, B.Hiriart, E.Sachidanandam, R.Lambert, E.Brettschneider, J.Reuter, M.Kadlec, J.Pillai, R.Yamashita, A.Yamamoto, M.Verdel, A.

(2017) EMBO J. 36: 2626-2641


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
YTH domain-containing protein mmi1
A, B, C, D
146Schizosaccharomyces pombe (strain 972 / ATCC 24843)Mutation(s): 0 
Gene Names: mmi1
Find proteins for O74958 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
Go to UniProtKB:  O74958
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.179 
  • R-Value Work: 0.157 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 57.020α = 90.00
b = 58.330β = 106.59
c = 94.090γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
autoSHARPphasing
REFMACrefinement
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-04-25
    Type: Initial release