5O6C

Crystal Structure of a threonine-selective RCR E3 ligase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.196 
  • R-Value Work: 0.172 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Activity-based E3 ligase profiling uncovers an E3 ligase with esterification activity.

Pao, K.C.Wood, N.T.Knebel, A.Rafie, K.Stanley, M.Mabbitt, P.D.Sundaramoorthy, R.Hofmann, K.van Aalten, D.M.F.Virdee, S.

(2018) Nature 556: 381-385


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
E3 ubiquitin-protein ligase MYCBP2
A
263Homo sapiensMutation(s): 0 
Gene Names: MYCBP2 (KIAA0916, PAM)
EC: 2.3.2.-
Find proteins for O75592 (Homo sapiens)
Go to Gene View: MYCBP2
Go to UniProtKB:  O75592
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.196 
  • R-Value Work: 0.172 
  • Space Group: P 61
Unit Cell:
Length (Å)Angle (°)
a = 82.578α = 90.00
b = 82.578β = 90.00
c = 103.303γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
SCALAdata scaling
SHELXDphasing
iMOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (United Kingdom)United KingdomMC_UU_12016/8
Wellcome TrustUnited Kingdom110061

Revision History 

  • Version 1.0: 2018-04-18
    Type: Initial release
  • Version 1.1: 2018-04-25
    Type: Data collection, Database references
  • Version 1.2: 2018-05-02
    Type: Data collection, Database references