5O65

Crystal Structure of the Pseudomonas functional amyloid secretion protein FapF


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.222 
  • R-Value Observed: 0.223 

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Literature

A new class of hybrid secretion system is employed in Pseudomonas amyloid biogenesis.

Rouse, S.L.Hawthorne, W.J.Berry, J.L.Chorev, D.S.Ionescu, S.A.Lambert, S.Stylianou, F.Ewert, W.Mackie, U.Morgan, R.M.L.Otzen, D.Herbst, F.A.Nielsen, P.H.Dueholm, M.Bayley, H.Robinson, C.V.Hare, S.Matthews, S.

(2017) Nat Commun 8: 263-263

  • DOI: https://doi.org/10.1038/s41467-017-00361-6
  • Primary Citation of Related Structures:  
    5O65, 5O67, 5O68

  • PubMed Abstract: 

    Gram-negative bacteria possess specialised biogenesis machineries that facilitate the export of amyloid subunits for construction of a biofilm matrix. The secretion of bacterial functional amyloid requires a bespoke outer-membrane protein channel through which unfolded amyloid substrates are translocated. Here, we combine X-ray crystallography, native mass spectrometry, single-channel electrical recording, molecular simulations and circular dichroism measurements to provide high-resolution structural insight into the functional amyloid transporter from Pseudomonas, FapF. FapF forms a trimer of gated β-barrel channels in which opening is regulated by a helical plug connected to an extended coil-coiled platform spanning the bacterial periplasm. Although FapF represents a unique type of secretion system, it shares mechanistic features with a diverse range of peptide translocation systems. Our findings highlight alternative strategies for handling and export of amyloid protein sequences.Gram-negative bacteria assemble biofilms from amyloid fibres, which translocate across the outer membrane as unfolded amyloid precursors through a secretion system. Here, the authors characterise the structural details of the amyloid transporter FapF in Pseudomonas.


  • Organizational Affiliation

    Department of Life Sciences, Imperial College London, South Kensington Campus, London, SW72AZ, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
FapF
A, B, C
334Pseudomonas sp. UK4Mutation(s): 1 
Gene Names: fapFPSUK4_00060
Membrane Entity: Yes 
UniProt
Find proteins for C4IN73 (Pseudomonas sp. UK4)
Explore C4IN73 
Go to UniProtKB:  C4IN73
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupC4IN73
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
C8E
Query on C8E

Download Ideal Coordinates CCD File 
F [auth A]
O [auth C]
P [auth C]
Q [auth C]
R [auth C]
F [auth A],
O [auth C],
P [auth C],
Q [auth C],
R [auth C],
S [auth C]
(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
C16 H34 O5
FEOZZFHAVXYAMB-UHFFFAOYSA-N
LDA
Query on LDA

Download Ideal Coordinates CCD File 
D [auth A]
E [auth A]
H [auth B]
I [auth B]
L [auth C]
D [auth A],
E [auth A],
H [auth B],
I [auth B],
L [auth C],
M [auth C],
N [auth C]
LAURYL DIMETHYLAMINE-N-OXIDE
C14 H31 N O
SYELZBGXAIXKHU-UHFFFAOYSA-N
NA
Query on NA

Download Ideal Coordinates CCD File 
G [auth A],
J [auth B],
K [auth B]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.222 
  • R-Value Observed: 0.223 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 143.26α = 90
b = 124.731β = 96.29
c = 80.359γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
SHELXDphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2017-08-23
    Type: Initial release