5O5F

Crystal structure of the human BRPF1 bromodomain in complex with BZ038


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.302 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.175 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure-based discovery of selective BRPF1 bromodomain inhibitors.

Zhu, J.Zhou, C.Caflisch, A.

(2018) Eur J Med Chem 155: 337-352


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Peregrin
A
116Homo sapiensMutation(s): 0 
Gene Names: BRPF1 (BR140)
Find proteins for P55201 (Homo sapiens)
Go to Gene View: BRPF1
Go to UniProtKB:  P55201
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
9LT
Query on 9LT

Download SDF File 
Download CCD File 
A
1-ethyl-~{N}-[(~{R})-(3-fluorophenyl)-(1-methylimidazol-2-yl)methyl]-2,3-bis(oxidanylidene)-4~{H}-quinoxaline-6-carboxamide
C22 H20 F N5 O3
ORFTXHBAJDABTM-GOSISDBHSA-N
 Ligand Interaction
NO3
Query on NO3

Download SDF File 
Download CCD File 
A
NITRATE ION
N O3
NHNBFGGVMKEFGY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.302 Å
  • R-Value Free: 0.188 
  • R-Value Work: 0.175 
  • Space Group: P 32 2 1
Unit Cell:
Length (Å)Angle (°)
a = 60.765α = 90.00
b = 60.765β = 90.00
c = 63.516γ = 120.00
Software Package:
Software NamePurpose
PHASERphasing
XDSdata reduction
PHENIXrefinement
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2017-06-01 
  • Released Date: 2018-06-13 
  • Deposition Author(s): Zhu, J., Caflisch, A.

Revision History 

  • Version 1.0: 2018-06-13
    Type: Initial release
  • Version 1.1: 2018-06-27
    Type: Data collection, Database references