5O4K

Crystal structure of P450 CYP121 in complex with compound 6b.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.174 
  • R-Value Work: 0.151 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Novel Aryl Substituted Pyrazoles as Small Molecule Inhibitors of Cytochrome P450 CYP121A1: Synthesis and Antimycobacterial Evaluation.

Taban, I.M.Elshihawy, H.E.A.E.Torun, B.Zucchini, B.Williamson, C.J.Altuwairigi, D.Ngu, A.S.T.McLean, K.J.Levy, C.W.Sood, S.Marino, L.B.Munro, A.W.de Carvalho, L.P.S.Simons, C.

(2017) J. Med. Chem. 60: 10257-10267


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Mycocyclosin synthase
A
396Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)Mutation(s): 0 
Gene Names: cyp121
EC: 1.14.19.70
Find proteins for P9WPP6 (Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh))
Go to UniProtKB:  P9WPP6
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
9KE
Query on 9KE

Download SDF File 
Download CCD File 
A
1-[(4-chlorophenyl)methyl]-4-(3-imidazol-1-ylpropyl)piperazin-2-one
C17 H21 Cl N4 O
UHJVZFXZSLURRR-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
HEM
Query on HEM

Download SDF File 
Download CCD File 
A
PROTOPORPHYRIN IX CONTAINING FE
HEME
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.174 
  • R-Value Work: 0.151 
  • Space Group: P 65 2 2
Unit Cell:
Length (Å)Angle (°)
a = 77.625α = 90.00
b = 77.625β = 90.00
c = 264.291γ = 120.00
Software Package:
Software NamePurpose
PHASERphasing
XSCALEdata scaling
REFMACrefinement
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2017-05-29 
  • Released Date: 2018-03-28 
  • Deposition Author(s): Levy, C.W.

Revision History 

  • Version 1.0: 2018-03-28
    Type: Initial release