5NSF

Structure of AzuAla


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.426 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.182 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Site-Resolved Observation of Vibrational Energy Transfer Using a Genetically Encoded Ultrafast Heater.

Baumann, T.Hauf, M.Schildhauer, F.Eberl, K.B.Durkin, P.M.Deniz, E.Loffler, J.G.Acevedo-Rocha, C.G.Jaric, J.Martins, B.M.Dobbek, H.Bredenbeck, J.Budisa, N.

(2019) Angew. Chem. Int. Ed. Engl. 58: 2899-2903


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Tyrosine--tRNA ligase
B, A, C, D
318Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)Mutation(s): 0 
Gene Names: tyrS
EC: 6.1.1.1
Find proteins for Q57834 (Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440))
Go to UniProtKB:  Q57834
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
96Z
Query on 96Z

Download SDF File 
Download CCD File 
A, B, C, D
(2~{S})-2-azanyl-3-(2,6-dihydroazulen-1-yl)propanoic acid
C13 H15 N O2
HICXVJKDDWMICV-LBPRGKRZSA-N
 Ligand Interaction
GOL
Query on GOL

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Download CCD File 
A, B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
CA
Query on CA

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Download CCD File 
A, B
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
PG4
Query on PG4

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Download CCD File 
A
TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.426 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.182 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 56.140α = 85.70
b = 70.633β = 89.75
c = 77.624γ = 83.42
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2017-04-26 
  • Released Date: 2019-01-16 
  • Deposition Author(s): Martins, B.M.

Revision History 

  • Version 1.0: 2019-01-16
    Type: Initial release
  • Version 1.1: 2019-02-13
    Type: Data collection, Database references
  • Version 1.2: 2019-02-27
    Type: Data collection, Database references