5NQK

human 199.16 TCR in complex with Melan-A/MART-1 (26-35) peptide and HLA-A2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.316 
  • R-Value Work: 0.224 
  • R-Value Observed: 0.228 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

human 199.16 TCR in complex with Melan-A/MART-1 (26-35) peptide and HLA-A2

Exertier, C.Reiser, J.-B.Housset, D.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
HLA class I histocompatibility antigen, A-2 alpha chainA [auth H]276Homo sapiensMutation(s): 0 
Gene Names: HLA-AHLAA
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PHAROS:  P04439
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Beta-2-microglobulinB [auth L]100Homo sapiensMutation(s): 0 
Gene Names: B2MCDABP0092HDCMA22P
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Melanoma antigen recognized by T-cells 1C [auth P]10Homo sapiensMutation(s): 0 
Gene Names: MLANAMART1
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Find proteins for Q16655 (Homo sapiens)
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PHAROS:  Q16655
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
T-cell receptor alpha variable 12-2,T-cell receptor alpha joining 45,T-cell receptor alpha chain C regionD [auth A]211Homo sapiensMutation(s): 1 
Gene Names: TRAV12-2TRAJ45TRAC
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
T-cell receptor beta variable 19,TRB proteinE [auth B]251Homo sapiensMutation(s): 0 
Gene Names: TCRBV17S1A1TTRBV19TRB
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Find proteins for A0A075B6N1 (Homo sapiens)
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PHAROS:  A0A075B6N1
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download Ideal Coordinates CCD File 
F [auth B]SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.316 
  • R-Value Work: 0.224 
  • R-Value Observed: 0.228 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 225.18α = 90
b = 49.72β = 97.69
c = 95.72γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-05-30
    Type: Initial release