5NPL

Crystal structure of hexameric CBS-CP12 protein from bloom-forming cyanobacteria, Yb-derivative at 2.8 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.79 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.186 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural and functional insights into the unique CBS-CP12 fusion protein family in cyanobacteria.

Hackenberg, C.Hakanpaa, J.Cai, F.Antonyuk, S.Eigner, C.Meissner, S.Laitaoja, M.Janis, J.Kerfeld, C.A.Dittmann, E.Lamzin, V.S.

(2018) Proc. Natl. Acad. Sci. U.S.A. 115: 7141-7146


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Similar to tr|Q8YYT1|Q8YYT1
A, B, C
208Microcystis aeruginosa PCC 7806Mutation(s): 0 
Find proteins for A8YJ50 (Microcystis aeruginosa PCC 7806)
Go to UniProtKB:  A8YJ50
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
YB
Query on YB

Download SDF File 
Download CCD File 
A, B, C
YTTERBIUM (III) ION
Yb
AWSFICBXMUKWSK-UHFFFAOYSA-N
 Ligand Interaction
DO3
Query on DO3

Download SDF File 
Download CCD File 
A
10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID
C17 H32 N4 O7
IQUHNCOJRJBMSU-CQSZACIVSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.79 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.186 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 79.890α = 90.00
b = 120.734β = 90.00
c = 117.548γ = 90.00
Software Package:
Software NamePurpose
XDSdata scaling
CRANK2phasing
REFMACrefinement
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-05-30
    Type: Initial release
  • Version 1.1: 2018-06-20
    Type: Data collection, Database references
  • Version 1.2: 2018-07-11
    Type: Data collection, Database references