5NI8

Ligand complex of RORg LBD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.262 
  • R-Value Work: 0.236 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Potent and Orally Bioavailable Inverse Agonists of ROR gamma t Resulting from Structure-Based Design.

Narjes, F.Xue, Y.von Berg, S.Malmberg, J.Llinas, A.Olsson, R.I.Jirholt, J.Grindebacke, H.Leffler, A.Hossain, N.Lepisto, M.Thunberg, L.Leek, H.Aagaard, A.McPheat, J.Hansson, E.L.Back, E.Tangefjord, S.Chen, R.Xiong, Y.Hongbin, G.Hansson, T.G.

(2018) J. Med. Chem. 61: 7796-7813


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Nuclear receptor ROR-gamma
A
288Homo sapiensMutation(s): 0 
Gene Names: RORC (NR1F3, RORG, RZRG)
Find proteins for P51449 (Homo sapiens)
Go to Gene View: RORC
Go to UniProtKB:  P51449
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
The Tethered SRC2-2 peptide
C
15Homo sapiensMutation(s): 0 
Gene Names: NCOA2 (BHLHE75, SRC2, TIF2)
Find proteins for Q15596 (Homo sapiens)
Go to Gene View: NCOA2
Go to UniProtKB:  Q15596
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
8Y2
Query on 8Y2

Download SDF File 
Download CCD File 
A
2-(4-ethylsulfonylphenyl)-~{N}-[4-(2-phenylmethoxypyridin-3-yl)thiophen-2-yl]ethanamide
C26 H24 N2 O4 S2
RHPSXPWLHPRNOB-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.262 
  • R-Value Work: 0.236 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 62.150α = 90.00
b = 62.150β = 90.00
c = 158.310γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
SCALAdata scaling
BUSTERrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-08-22
    Type: Initial release
  • Version 1.1: 2018-10-24
    Type: Data collection, Database references