5NGZ

Ube2T in complex with fragment EM04


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.210 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Allosteric Targeting of the Fanconi Anemia Ubiquitin-Conjugating Enzyme Ube2T by Fragment Screening.

Morreale, F.E.Bortoluzzi, A.Chaugule, V.K.Arkinson, C.Walden, H.Ciulli, A.

(2017) J. Med. Chem. 60: 4093-4098

  • DOI: 10.1021/acs.jmedchem.7b00147

  • PubMed Abstract: 
  • Ube2T is the E2 ubiquitin-conjugating enzyme of the Fanconi anemia DNA repair pathway and it is overexpressed in several cancers, representing an attractive target for the development of inhibitors. Despite the extensive efforts in targeting the ubiq ...

    Ube2T is the E2 ubiquitin-conjugating enzyme of the Fanconi anemia DNA repair pathway and it is overexpressed in several cancers, representing an attractive target for the development of inhibitors. Despite the extensive efforts in targeting the ubiquitin system, very few E2 binders have currently been discovered. Herein we report the identification of a new allosteric pocket on Ube2T through a fragment screening using biophysical methods. Several fragments binding to this site inhibit ubiquitin conjugation in vitro.


    Organizational Affiliation

    MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee , Dundee DD1 5EH, United Kingdom.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin-conjugating enzyme E2 T
A
197Homo sapiensMutation(s): 0 
Gene Names: UBE2T
EC: 2.3.2.23
Find proteins for Q9NPD8 (Homo sapiens)
Go to Gene View: UBE2T
Go to UniProtKB:  Q9NPD8
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
2BG
Query on 2BG

Download SDF File 
Download CCD File 
A
1-(1,3-benzothiazol-2-yl)methanamine
C8 H8 N2 S
VLBUERZRFSORRZ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.210 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 55.817α = 90.00
b = 55.817β = 90.00
c = 185.278γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
REFMACphasing
XDSdata reduction
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-05-03
    Type: Initial release
  • Version 1.1: 2017-05-24
    Type: Database references