5NEJ

CryoEM Structure of Foot and Mouth Disease Virus O1 Manisa


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Rules of engagement between alpha v beta 6 integrin and foot-and-mouth disease virus.

Kotecha, A.Wang, Q.Dong, X.Ilca, S.L.Ondiviela, M.Zihe, R.Seago, J.Charleston, B.Fry, E.E.Abrescia, N.G.A.Springer, T.A.Huiskonen, J.T.Stuart, D.I.

(2017) Nat Commun 8: 15408-15408

  • DOI: 10.1038/ncomms15408
  • Primary Citation of Related Structures:  
    5NED, 5NEJ, 5NE4, 5NEU, 5NET, 5NEM, 5NER

  • PubMed Abstract: 
  • Foot-and-mouth disease virus (FMDV) mediates cell entry by attachment to an integrin receptor, generally αvβ6, via a conserved arginine-glycine-aspartic acid (RGD) motif in the exposed, antigenic, GH loop of capsid protein VP1. Infection can also occur in tissue culture adapted virus in the absence of integrin via acquired basic mutations interacting with heparin sulphate (HS); this virus is attenuated in natural infections ...

    Foot-and-mouth disease virus (FMDV) mediates cell entry by attachment to an integrin receptor, generally αvβ6, via a conserved arginine-glycine-aspartic acid (RGD) motif in the exposed, antigenic, GH loop of capsid protein VP1. Infection can also occur in tissue culture adapted virus in the absence of integrin via acquired basic mutations interacting with heparin sulphate (HS); this virus is attenuated in natural infections. HS interaction has been visualized at a conserved site in two serotypes suggesting a propensity for sulfated-sugar binding. Here we determined the interaction between αvβ6 and two tissue culture adapted FMDV strains by cryo-electron microscopy. In the preferred mode of engagement, the fully open form of the integrin, hitherto unseen at high resolution, attaches to an extended GH loop via interactions with the RGD motif plus downstream hydrophobic residues. In addition, an N-linked sugar of the integrin attaches to the previously identified HS binding site, suggesting a functional role.


    Organizational Affiliation

    Diamond Light Sources, Harwell Science and Innovation Campus, Didcot OX11 0DE, UK.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
O1 Manisa VP1 1211Foot-and-mouth disease virusMutation(s): 0 
EC: 2.7.7.48 (UniProt), 3.4.22.28 (UniProt), 3.4.22.46 (UniProt), 3.6.1.15 (UniProt)
Find proteins for Q6PMW3 (Foot-and-mouth disease virus - type O)
Explore Q6PMW3 
Go to UniProtKB:  Q6PMW3
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
O1 Manisa VP2 2218Foot-and-mouth disease virusMutation(s): 1 
EC: 2.7.7.48 (UniProt), 3.4.22.28 (UniProt), 3.4.22.46 (UniProt), 3.6.1.15 (UniProt)
Find proteins for Q6PMW3 (Foot-and-mouth disease virus - type O)
Explore Q6PMW3 
Go to UniProtKB:  Q6PMW3
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
O1 Manisa VP3 3220Foot-and-mouth disease virusMutation(s): 0 
EC: 2.7.7.48 (UniProt), 3.4.22.28 (UniProt), 3.4.22.46 (UniProt), 3.6.1.15 (UniProt)
Find proteins for Q6PMW3 (Foot-and-mouth disease virus - type O)
Explore Q6PMW3 
Go to UniProtKB:  Q6PMW3
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
O1 Manisa VP1 485Foot-and-mouth disease virusMutation(s): 0 
EC: 2.7.7.48 (UniProt), 3.6.1.15 (UniProt)
Find proteins for D1H101 (Foot-and-mouth disease virus)
Explore D1H101 
Go to UniProtKB:  D1H101
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (United Kingdom)United KingdomG1000099
Medical Research Council (United Kingdom)United KingdomG1100525/1
Wellcome TrustUnited Kingdom090532/Z/09/Z

Revision History  (Full details and data files)

  • Version 1.0: 2017-06-21
    Type: Initial release
  • Version 1.1: 2017-08-02
    Changes: Data collection, Experimental preparation, Refinement description