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Download EndnoteA crystallographic fragment study with human Pim-1 kinase
Siefker, C., Heine, A., Hardes, K., Steinmetzer, A., Klebe, G.To be published.
5N4Z
Crystal structure of human Pim-1 kinase in complex with a consensus peptide and fragment like molecule (E)-4-(4-hydroxyphenyl)but-3-en-2-one
- DOI: 10.2210/pdb5N4Z/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): 1
- Deposited: 2017-02-11 Released: 2018-02-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.257 Å
- R-Value Free: 0.208
- R-Value Work: 0.179
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Serine/threonine-protein kinase pim-1 | A | 313 | Homo sapiens | Mutation(s): 1 Gene Names: PIM1 EC: 2.7.11.1 |
Find proteins for P11309 (Homo sapiens) Go to Gene View: PIM1 Go to UniProtKB: P11309 | ||||
Entity ID: 2 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Pimtide | B | 14 | N/A | Mutation(s): 0 |
| Protein Feature View is not available: No corresponding UniProt sequence found. | ||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 8MK Query on 8MK | A | (~{E})-4-(4-hydroxyphenyl)but-3-en-2-one C10 H10 O2 OCNIKEFATSKIBE-NSCUHMNNSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.257 Å
- R-Value Free: 0.208
- R-Value Work: 0.179
- Space Group: P 65
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 98.553 | α = 90.00 |
| b = 98.553 | β = 90.00 |
| c = 80.941 | γ = 120.00 |
| Software Name | Purpose |
|---|---|
| PHASER | phasing |
| XDS | data scaling |
| PHENIX | refinement |
| XDS | data reduction |
Entry History
Deposition Data
- Deposited Date: 2017-02-11
- Released Date: 2018-02-28
- Deposition Author(s): Siefker, C., Heine, A., Klebe, G.
