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Download EndnoteA crystallographic fragment study with cAMP-dependent protein kinase A
Siefker, C., Heine, A., Klebe, G.To be published.
5N3L
cAMP-dependent Protein Kinase A from Cricetulus griseus in complex with fragment like molecule 4-[(1R)-2-amino-1-hydroxyethyl]benzene-1,2-diol
- DOI: 10.2210/pdb5N3L/pdb
- Classification: TRANSFERASE
- Organism(s): Cricetulus griseus
- Expression System: Escherichia coli BL21(DE3)
- Deposited: 2017-02-08 Released: 2018-02-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.38 Å
- R-Value Free: 0.160
- R-Value Work: 0.130
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| cAMP-dependent protein kinase catalytic subunit alpha | A | 353 | Cricetulus griseus | Mutation(s): 0 Gene Names: PRKACA EC: 2.7.11.11 |
Find proteins for P25321 (Cricetulus griseus) Go to Gene View: PRKACA Go to UniProtKB: P25321 | ||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| E5E Query on E5E | A | Noradrenaline C8 H12 N O3 SFLSHLFXELFNJZ-QMMMGPOBSA-O |  | Ligand Interaction | |
| DMS Query on DMS | A | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N |  | Ligand Interaction | |
| MPD Query on MPD | A | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |  | Ligand Interaction | |
| Modified Residues 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| SEP Query on SEP | A | L-PEPTIDE LINKING | C3 H8 N O6 P |  | SER |
| TPO Query on TPO | A | L-PEPTIDE LINKING | C4 H10 N O6 P |  | THR |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.38 Å
- R-Value Free: 0.160
- R-Value Work: 0.130
- Space Group: P 21 21 21
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 52.070 | α = 90.00 |
| b = 71.190 | β = 90.00 |
| c = 97.172 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| XDS | data scaling |
| Coot | model building |
| XDS | data reduction |
| PHASER | phasing |
| PHENIX | refinement |
Entry History
Deposition Data
- Deposited Date: 2017-02-08
- Released Date: 2018-02-28
- Deposition Author(s): Siefker, C., Heine, A., Klebe, G.
