5N0G

Crystal Structure of CobH T85A (precorrin-8x methyl mutase) complexed with C5 allyl-HBA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.57 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.172 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Novel cobalamin analogues and their application in the trafficking of cobalamin in bacteria, worms and plants

Lawrence, A.D.Nemoto-Smith, E.H.Deery, E.C.Brown, D.G.Tullet, J.Brown, I.R.Howard, M.Boshoff, H.I.Barry III, C.E.Warren, M.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Precorrin-8X methylmutase
A
208Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)Mutation(s): 1 
Gene Names: cobH
EC: 5.4.1.2
Find proteins for D5AV08 (Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
Go to UniProtKB:  D5AV08
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
8F5
Query on 8F5

Download SDF File 
Download CCD File 
A
3-[(1~{R},2~{S},3~{S},4~{Z},7~{S},8~{S},9~{Z},15~{R},17~{R},18~{R},19~{R})-2,7,18-tris(2-hydroxy-2-oxoethyl)-3,13,17-tris(3-hydroxy-3-oxopropyl)-1,2,7,12,12,15,17-heptamethyl-5-prop-2-enyl-3,8,15,18,19,21-hexahydrocorrin-8-yl]propanoic acid
C47 H62 N4 O14
VXYZYIAZOLQLTR-JBBZEPTESA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.57 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.172 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 71.230α = 90.00
b = 66.630β = 99.03
c = 48.920γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
xia2data reduction
XSCALEdata scaling
PDB_EXTRACTdata extraction
REFMACphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/K009249/1

Revision History 

  • Version 1.0: 2018-02-14
    Type: Initial release