5MWJ | pdb_00005mwj

Structure Enabled Discovery of a Stapled Peptide Inhibitor to Target the Oncogenic Transcriptional Repressor TLE1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.04 Å
  • R-Value Free: 
    0.219 (Depositor), 0.250 (DCC) 
  • R-Value Work: 
    0.188 (Depositor), 0.210 (DCC) 
  • R-Value Observed: 
    0.190 (Depositor) 

Starting Model: experimental
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Ligand Structure Quality Assessment 


This is version 1.5 of the entry. See complete history


Literature

Structure-Enabled Discovery of a Stapled Peptide Inhibitor to Target the Oncogenic Transcriptional Repressor TLE1.

McGrath, S.Tortorici, M.Drouin, L.Solanki, S.Vidler, L.Westwood, I.Gimeson, P.Van Montfort, R.Hoelder, S.

(2017) Chemistry 23: 9577-9584

  • DOI: https://doi.org/10.1002/chem.201700747
  • Primary Citation of Related Structures:  
    5MWJ

  • PubMed Abstract: 

    TLE1 is an oncogenic transcriptional co-repressor that exerts its repressive effects through binding of transcription factors. Inhibition of this protein-protein interaction represents a putative cancer target, but no small-molecule inhibitors have been published for this challenging interface. Herein, the structure-enabled design and synthesis of a constrained peptide inhibitor of TLE1 is reported. The design features the introduction of a four-carbon-atom linker into the peptide epitope found in many TLE1 binding partners. A concise synthetic route to a proof-of-concept peptide, cycFWRPW, has been developed. Biophysical testing by isothermal titration calorimetry and thermal shift assays showed that, although the constrained peptide bound potently, it had an approximately five-fold higher K d than that of the unconstrained peptide. The co-crystal structure suggested that the reduced affinity was likely to be due to a small shift of one side chain, relative to the otherwise well-conserved conformation of the acyclic peptide. This work describes a constrained peptide inhibitor that may serve as the basis for improved inhibitors.


  • Organizational Affiliation
    • The Institute of Cancer Research, Division of Cancer Therapeutics Unit, Cancer Research UK Cancer Therapeutics Unit, 15 Cotswold Road, Sutton, Surrey, SM2 5NG, UK.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transducin-like enhancer protein 1
A, B
337Homo sapiensMutation(s): 0 
Gene Names: TLE1
UniProt & NIH Common Fund Data Resources
Find proteins for Q04724 (Homo sapiens)
Explore Q04724 
Go to UniProtKB:  Q04724
PHAROS:  Q04724
GTEx:  ENSG00000196781 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ04724
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.04 Å
  • R-Value Free:  0.219 (Depositor), 0.250 (DCC) 
  • R-Value Work:  0.188 (Depositor), 0.210 (DCC) 
  • R-Value Observed: 0.190 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 58.94α = 90
b = 57β = 103.01
c = 104.14γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2017-04-05
    Type: Initial release
  • Version 1.1: 2017-07-26
    Changes: Database references
  • Version 1.2: 2018-10-10
    Changes: Data collection, Source and taxonomy, Structure summary
  • Version 1.3: 2018-10-17
    Changes: Data collection, Source and taxonomy
  • Version 1.4: 2019-10-16
    Changes: Data collection, Structure summary
  • Version 1.5: 2024-01-17
    Changes: Data collection, Database references, Refinement description