5MV1

Crystal structure of the E protein of the Japanese encephalitis virulent virus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.272 
  • R-Value Work: 0.211 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

The structure differences of Japanese encephalitis virus SA14 and SA14-14-2 E proteins elucidate the virulence attenuation mechanism.

Liu, X.Zhao, X.Na, R.Li, L.Warkentin, E.Witt, J.Lu, X.Yu, Y.Wei, Y.Peng, G.Li, Y.Wang, J.

(2019) Protein Cell 10: 149-153


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
E protein
A
407Japanese encephalitis virus (strain SA-14)Mutation(s): 0 
Find proteins for P27395 (Japanese encephalitis virus (strain SA-14))
Go to UniProtKB:  P27395
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.272 
  • R-Value Work: 0.211 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 67.090α = 90.00
b = 33.190β = 107.46
c = 98.510γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
PHASERphasing
XDSdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-05-23
    Type: Initial release
  • Version 1.1: 2019-02-27
    Type: Data collection, Database references