5MRV

Crystal structure of human carboxypeptidase O in complex with NvCI


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.854 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.185 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure and mechanism of human carboxypeptidase O: Insights into its specific activity for acidic residues.

Garcia-Guerrero, M.C.Garcia-Pardo, J.Berenguer, E.Fernandez-Alvarez, R.Barfi, G.B.Lyons, P.J.Aviles, F.X.Huber, R.Lorenzo, J.Reverter, D.

(2018) Proc. Natl. Acad. Sci. U.S.A. 115: E3932-E3939


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Carboxypeptidase O
A, B
355Homo sapiensMutation(s): 0 
Gene Names: CPO
EC: 3.4.17.-
Find proteins for Q8IVL8 (Homo sapiens)
Go to Gene View: CPO
Go to UniProtKB:  Q8IVL8
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Metallocarboxypeptidase inhibitor
C
53Nerita versicolorMutation(s): 0 
Find proteins for P86912 (Nerita versicolor)
Go to UniProtKB:  P86912
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.854 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.185 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 150.114α = 90.00
b = 72.144β = 94.66
c = 90.187γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
XDSdata reduction
Aimlessdata scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-01-17
    Type: Initial release
  • Version 1.1: 2018-05-16
    Type: Data collection, Database references