5MRC

Structure of the yeast mitochondrial ribosome - Class A


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.25 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The structure of the yeast mitochondrial ribosome.

Desai, N.Brown, A.Amunts, A.Ramakrishnan, V.

(2017) Science 355: 528-531

  • DOI: 10.1126/science.aal2415
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Mitochondria have specialized ribosomes (mitoribosomes) dedicated to the expression of the genetic information encoded by their genomes. Here, using electron cryomicroscopy, we have determined the structure of the 75-component yeast mitoribosome to a ...

    Mitochondria have specialized ribosomes (mitoribosomes) dedicated to the expression of the genetic information encoded by their genomes. Here, using electron cryomicroscopy, we have determined the structure of the 75-component yeast mitoribosome to an overall resolution of 3.3 angstroms. The mitoribosomal small subunit has been built de novo and includes 15S ribosomal RNA (rRNA) and 34 proteins, including 14 without homologs in the evolutionarily related bacterial ribosome. Yeast-specific rRNA and protein elements, including the acquisition of a putatively active enzyme, give the mitoribosome a distinct architecture compared to the mammalian mitoribosome. At an expanded messenger RNA channel exit, there is a binding platform for translational activators that regulate translation in yeast but not mammalian mitochondria. The structure provides insights into the evolution and species-specific specialization of mitochondrial translation.


    Organizational Affiliation

    MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK.,SciLifeLab, Stockholm University, SE-106 91 Stockholm, Sweden.,MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK. ramak@mrc-lmb.cam.ac.uk.




Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
uL2m
B
393Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RML2
Find proteins for P32611 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P32611
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
uL3m
C
249Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL9
Find proteins for P31334 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: MRPL9
Go to UniProtKB:  P31334
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
uL4m
D
252Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: YML6
Find proteins for P51998 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P51998
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
uL5m
E
274Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL7
Find proteins for P36519 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P36519
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
uL6m
F
196Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL6
Find proteins for P32904 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P32904
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
bL9m
G
74Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL50
Find proteins for P53724 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: MRPL50
Go to UniProtKB:  P53724
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
uL13m
H
160Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL23
Find proteins for Q12487 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: MRPL23
Go to UniProtKB:  Q12487
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
uL14m
I
138Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL38 (MRPL34)
Find proteins for P35996 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: MRPL38
Go to UniProtKB:  P35996
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
uL15m
J
220Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL10 (MRPL18)
Find proteins for P36520 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: MRPL10
Go to UniProtKB:  P36520
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetails
uL16m
K
195Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL16 (RML16)
Find proteins for P38064 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: MRPL16
Go to UniProtKB:  P38064
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetails
bL17m
L
237Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL8
Find proteins for P22353 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P22353
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetails
bL19m
M
151Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: IMG1 (PETCR46)
Find proteins for P25626 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P25626
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetails
bL21m
N
118Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL49
Find proteins for P40858 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: MRPL49
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Entity ID: 15
MoleculeChainsSequence LengthOrganismDetails
uL22m
O
225Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL22
Find proteins for P53881 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  P53881
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetails
uL23m
P
207Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRP20 (MRPL41)
Find proteins for P32387 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P32387
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetails
uL24m
Q
296Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL40
Find proteins for P36534 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: MRPL40
Go to UniProtKB:  P36534
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetails
bL27m
R
337Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRP7 (MRPL2)
Find proteins for P12687 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P12687
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetails
bL28m
S
216Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL24 (MRPL14)
Find proteins for P36525 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: MRPL24
Go to UniProtKB:  P36525
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetails
uL29m
T
225Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL4
Find proteins for P36517 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: MRPL4
Go to UniProtKB:  P36517
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetails
uL30m
U
82Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL33
Find proteins for P20084 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 22
MoleculeChainsSequence LengthOrganismDetails
bL31m
V
177Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL36
Find proteins for P36531 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 23
MoleculeChainsSequence LengthOrganismDetails
bL32m
W
112Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL32
Find proteins for P25348 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 24
MoleculeChainsSequence LengthOrganismDetails
bL33m
X
64Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL39
Find proteins for P36533 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  P36533
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetails
bL34m
Y
46Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Find proteins for Q04598 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q04598
Entity ID: 26
MoleculeChainsSequence LengthOrganismDetails
bL35m
Z
62Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Find proteins for P53921 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P53921
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetails
bL36m
0
38Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RTC6 (TAE4)
Find proteins for O14464 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  O14464
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetails
mL38
1
348Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL35
Find proteins for Q06678 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: MRPL35
Go to UniProtKB:  Q06678
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetails
mL40
2
113Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL28
Find proteins for P36527 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 30
MoleculeChainsSequence LengthOrganismDetails
mL41
3
130Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL27
Find proteins for P36526 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 31
MoleculeChainsSequence LengthOrganismDetails
mL43
4
138Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL51
Find proteins for Q06090 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  Q06090
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetails
mL44
5
324Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL3
Find proteins for P36516 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 33
MoleculeChainsSequence LengthOrganismDetails
mL46
6
281Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL17 (MRPL30)
Find proteins for P36528 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  P36528
Entity ID: 34
MoleculeChainsSequence LengthOrganismDetails
mL49
7
106Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: IMG2
Find proteins for P25642 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P25642
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetails
mL50
8
264Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL13
Find proteins for Q02204 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  Q02204
Entity ID: 36
MoleculeChainsSequence LengthOrganismDetails
mL57
9
215Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL15
Find proteins for P36523 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: MRPL15
Go to UniProtKB:  P36523
Entity ID: 37
MoleculeChainsSequence LengthOrganismDetails
mL58
a
177Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL20
Find proteins for P22354 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 38
MoleculeChainsSequence LengthOrganismDetails
mL59
b
155Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL25 (YMR26)
Find proteins for P23369 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P23369
Entity ID: 39
MoleculeChainsSequence LengthOrganismDetails
mL60
c
119Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPL31
Find proteins for P14063 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P14063
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetails
mL67
d
215Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MHR1 (XTC1)
Find proteins for Q06630 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q06630
Entity ID: 41
MoleculeChainsSequence LengthOrganismDetails
bS1m
AA
344Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRP51
Find proteins for Q02950 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q02950
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetails
uS2m
BB
266Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRP4 (MRP4A)
Find proteins for P32902 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P32902
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetails
uS3m
CC
398Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: VAR1
Find proteins for P02381 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P02381
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetails
uS4m
DD
486Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: NAM9 (MNA6)
Find proteins for P27929 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P27929
Entity ID: 45
MoleculeChainsSequence LengthOrganismDetails
uS5m
EE
293Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPS5
Find proteins for P33759 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: MRPS5
Go to UniProtKB:  P33759
Entity ID: 46
MoleculeChainsSequence LengthOrganismDetails
bS6m
FF
125Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRP17
Find proteins for P28778 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P28778
Entity ID: 47
MoleculeChainsSequence LengthOrganismDetails
uS7m
GG
161Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RSM7
Find proteins for P47150 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P47150
Entity ID: 48
MoleculeChainsSequence LengthOrganismDetails
uS8m
HH
154Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPS8
Find proteins for Q03799 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q03799
Entity ID: 49
MoleculeChainsSequence LengthOrganismDetails
uS9m
II
244Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPS9
Find proteins for P38120 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 50
MoleculeChainsSequence LengthOrganismDetails
uS10m
JJ
186Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RSM10
Find proteins for Q03201 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q03201
Entity ID: 51
MoleculeChainsSequence LengthOrganismDetails
uS11m
KK
148Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPS18
Find proteins for P42847 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P42847
Entity ID: 52
MoleculeChainsSequence LengthOrganismDetails
uS12m
LL
124Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPS12
Find proteins for P53732 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 53
MoleculeChainsSequence LengthOrganismDetails
uS13m
MM
120Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: SWS2
Find proteins for P53937 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P53937
Entity ID: 54
MoleculeChainsSequence LengthOrganismDetails
uS14m
NN
115Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRP2
Find proteins for P10663 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P10663
Entity ID: 55
MoleculeChainsSequence LengthOrganismDetails
uS15m
OO
253Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPS28
Find proteins for P21771 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 56
MoleculeChainsSequence LengthOrganismDetails
bS16m
PP
119Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPS16
Find proteins for Q02608 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 57
MoleculeChainsSequence LengthOrganismDetails
uS17m
QQ
237Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPS17
Find proteins for Q03246 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 58
MoleculeChainsSequence LengthOrganismDetails
bS18m
RR
99Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RSM18
Find proteins for P40033 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P40033
Entity ID: 59
MoleculeChainsSequence LengthOrganismDetails
uS19m
SS
80Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RSM19
Find proteins for P53733 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P53733
Entity ID: 60
MoleculeChainsSequence LengthOrganismDetails
bS21m
TT
92Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRP21 (MRP50)
Find proteins for P38175 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P38175
Entity ID: 61
MoleculeChainsSequence LengthOrganismDetails
mS23
UU
233Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RSM25
Find proteins for P40496 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P40496
Entity ID: 62
MoleculeChainsSequence LengthOrganismDetails
mS26
VV
233Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: PET123
Find proteins for P17558 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P17558
Entity ID: 63
MoleculeChainsSequence LengthOrganismDetails
mS29
WW
401Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RSM23
Find proteins for Q01163 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q01163
Entity ID: 64
MoleculeChainsSequence LengthOrganismDetails
mS33
XX
96Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RSM27
Find proteins for P53305 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P53305
Entity ID: 65
MoleculeChainsSequence LengthOrganismDetails
mS35
YY
273Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RSM24
Find proteins for Q03976 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q03976
Entity ID: 66
MoleculeChainsSequence LengthOrganismDetails
mS37
ZZ
91Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRP10
Find proteins for O75012 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  O75012
Entity ID: 67
MoleculeChainsSequence LengthOrganismDetails
mS38
11
34Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: QRI5 (COX24)
Find proteins for P32344 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P32344
Entity ID: 68
MoleculeChainsSequence LengthOrganismDetails
mS41
22
99Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: FYV4
Find proteins for P38783 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P38783
Entity ID: 69
MoleculeChainsSequence LengthOrganismDetails
mS42
33
255Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RSM26
Find proteins for P47141 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P47141
Entity ID: 70
MoleculeChainsSequence LengthOrganismDetails
mS43
44
321Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRP1
Find proteins for P10662 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P10662
Entity ID: 71
MoleculeChainsSequence LengthOrganismDetails
mS44
55
339Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRP13
Find proteins for P12686 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P12686
Entity ID: 72
MoleculeChainsSequence LengthOrganismDetails
mS45
66
319Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MRPS35
Find proteins for P53292 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  P53292
Entity ID: 73
MoleculeChainsSequence LengthOrganismDetails
mS46
77
165Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RSM28
Find proteins for Q03430 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q03430
Entity ID: 74
MoleculeChainsSequence LengthOrganismDetails
mS47
88
457Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: EHD3 (MRP5)
EC: 3.1.2.4
Find proteins for P28817 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: EHD3
Go to UniProtKB:  P28817
Entity ID: 77
MoleculeChainsSequence LengthOrganismDetails
unknown protein sequence 1
cc
94N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 78
MoleculeChainsSequence LengthOrganismDetails
unknown protein sequence 2
dd
151N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 1
MoleculeChainsLengthOrganism
21S ribosomal RNAA3296Saccharomyces cerevisiae
Entity ID: 75
MoleculeChainsLengthOrganism
15S ribosomal RNAaa1649Saccharomyces cerevisiae
Entity ID: 76
MoleculeChainsLengthOrganism
tRNAbb76Saccharomyces cerevisiae
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GDP
Query on GDP

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Download CCD File 
WW
GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
 Ligand Interaction
ZN
Query on ZN

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Download CCD File 
0, W
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
NA
Query on NA

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Download CCD File 
B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

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Download CCD File 
3, A, aa, BB, d, MM, NN, QQ, WW
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
UNK
Query on UNK
cc, dd
L-PEPTIDE LINKINGC4 H9 N O2

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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.25 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited KingdomWT096570
Wellcome TrustUnited Kingdom110301/Z/15/Z
Medical Research Council (United Kingdom)United KingdomMC_U105184332
Agouron InstituteUnited Kingdom--
Louis-Jeantet FoundationUnited Kingdom--

Revision History 

  • Version 1.0: 2017-02-15
    Type: Initial release
  • Version 1.1: 2017-08-02
    Type: Data collection, Derived calculations
  • Version 1.2: 2018-02-07
    Type: Structure summary